Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_026588.1 Length=60285 Score E Sequences producing significant alignments: (Bits) Value seq208634 226 1e-54 >seq208634 Length=57299 Score = 226 bits (250), Expect = 1e-54 Identities = 398/579 (69%), Gaps = 12/579 (2%) Strand=Plus/Plus Query 45234 GCGCTGCAACGCTCCATCGGGTGCGAACGCATCGAAGCCTCCGGCGAGGGCTGGCTGTTC 45293 |||||| ||| || | || ||| || |||| ||||| ||| || || | | | Sbjct 42591 GCGCTGGTCCGCGCCTTGGGCGTCGAGCGGGTCGAGGCCTCGGGCCCGGACTATCGCTGC 42650 Query 45294 GCCAACAACGACTGCGTACCCGAAACCAACAGCATGGCAGACAATTCGGTGGACCTGATC 45353 | | ||||||||||||| |||| ||| | |||||| || |||||| | |||||| Sbjct 42651 GTCCACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATC 42710 Query 45354 GTCACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGC 45413 |||||| || |||||| || ||| ||||| |||| |||| ||| |||||||||| Sbjct 42711 GTCACCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGC 42770 Query 45414 CACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAACTGCTG 45473 |||||||||||| ||| |||||||||| |||||||| || || || |||||||| Sbjct 42771 CACACCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTG 42830 Query 45474 CGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTTGTTCGGC 45533 ||| | || | ||| || |||||| || ||| ||||||||||| ||| | ||| Sbjct 42831 CGCGTTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGC 42890 Query 45534 AACGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA-GGCGATC----- 45587 | ||| ||| || ||| ||| |||| || | ||| || ||| | Sbjct 42891 GGCATCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAG 42950 Query 45588 TTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCATCGTGGTCACCGATGTG 45647 ||||| || || ||||| | ||| |||||||||| | | | ||| || ||| Sbjct 42951 TTCCAGCGC------CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTG 43004 Query 45648 GTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACC 45707 ||||| || ||||||||||| || || ||||||||| ||||||| ||||| |||| | | Sbjct 43005 GTGCGCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCG 43064 Query 45708 AAGATGGGCGTTGGCTCCCCGGAATACGTTCTGTTGTTCCACAAACCGCAGACAGACAGG 45767 |||||| |||| ||||||||| | ||| | |||| | |||| ||| || | Sbjct 43065 CGCATGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCCGCCGCCCGCCGACCGATCGC 43124 Query 45768 TCGAAGGGATACGCCGACACCCCCGTCACCAAATCCAAG 45806 || || || |||||| || || |||| ||||| Sbjct 43125 AGCAACGGCTATGCCGACCGGCCGGTGGCCAAGGCCAAG 43163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192276474051948