Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_026593.1 Length=59419 Score E Sequences producing significant alignments: (Bits) Value seq208634 223 1e-53 >seq208634 Length=57299 Score = 223 bits (246), Expect = 1e-53 Identities = 583/876 (67%), Gaps = 40/876 (5%) Strand=Plus/Plus Query 45064 CGGCAAACCGGTGATGCTTGGGCAGGGCATGAACCTGCAGCAG----GC-CCACGTCTGT 45118 || ||| || |||||||| ||| |||| |||||||||| | || || ||| || Sbjct 42305 CGCCAAGCCCGTGATGCTGGGGTCCGGCACCAACCTGCAGCGGCATTGCGCCTGGTCCGT 42364 Query 45119 GTCTACATCGGCATCACGCACAAGTTCAACGACCTGATCCAGAGCTTGCACCGGATTCAG 45178 || | | |||||| ||||||||||||| | |||||| | || ||| | | | Sbjct 42365 GTT--CCTGGGCATCGGCTTCAAGTTCAACGACTTCATCCAGGCGGTCCATCGGCTGCGG 42422 Query 45179 CGGTTCGGCCAAA---CCCACCCCTGTACAGCCC-ATTTGATCCATTCCGAGACCGAACG 45234 || ||||| || | || || | || | || | | ||||| | ||||| |||| || Sbjct 42423 CGCTTCGGGCAGATCGCCGACAGC-GTGCGGCTCGACATGATCTACACCGAGGCCGAGCG 42481 Query 45235 GGAAGTGGTTCGCATCATCCGCGAGAA-----ATGGGCCCAGCACAGAGAGCTGACATCA 45289 || ||| ||| | ||| |||| |||| |||||||| ||| || ||| Sbjct 42482 CGA---GGTCCGCCGCT--CGCTAGAACGCAAATGGCGCCAGCACAACGAGATGGT-TCA 42535 Query 45290 -ACTATGACTGACATAATCCACGAATACGGGCTTGACCCCGAG---GCAATCTCGGAAGC 45345 | |||| ||||| || | |||||||| || | |||| || || | | || Sbjct 42536 GAAGATGATCGACATCGTCAAGGAATACGGCCT---CAGCGAGATTGCCATGCAGCAGGC 42592 Query 45346 GCTGCAACGGTCCATCGGATGCGAACGAATCGAAGCATCCGGTGAGGGCTGGCTGTTCGC 45405 |||| || || | || ||| || |||| || || || || || | | || Sbjct 42593 GCTGGTCCGCGCCTTGGGCGTCGAGCGGGTCGAGGCCTCGGGCCCGGACTATCGCTGCGT 42652 Query 45406 CAACAACGACTGCGTACCCGAAACCGAGAGAATGGCAGACGATTCGGTGGATCTGATTGT 45465 | ||||||||||||| |||| ||| ||||| || | |||||| | ||||| || Sbjct 42653 CCACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGT 42712 Query 45466 CACCAGTATTCCGTTCTCCAACCACTACGAATACACGCCGAGCTACAACGACTTCGGCCA 45525 |||| || |||||| || ||| |||||||||| |||| ||| |||||||||||| Sbjct 42713 CACCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCA 42772 Query 45526 CACCGACGACAACGCCCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAACTGCTGCG 45585 |||||||||| ||| ||||||||| |||||||| || || || |||||||||| Sbjct 42773 CACCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCG 42832 Query 45586 CATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAA 45645 | | || | ||||||||| ||| || ||||||||||||||| ||| | || Sbjct 42833 CGTTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGG 42892 Query 45646 CGTCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA-----GGCGATCTTT 45700 | ||| ||| || ||| ||| |||| || | ||| || ||| || Sbjct 42893 CATCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTT 42952 Query 45701 CACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGTG 45760 | | ||| || ||||| | ||| |||||||||| ||| | ||| || |||||| Sbjct 42953 CCAG--CGC---CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTG 43007 Query 45761 CGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAG 45820 || || ||||||||||| || || ||||||||| | ||||| ||||| |||| | | Sbjct 43008 CGCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGC 43067 Query 45821 ATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAGACAGACAGGTCG 45880 |||||| |||| ||||||||| | ||| | |||| | |||| ||| || | Sbjct 43068 ATGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCCGCCGCCCGCCGACCGATCGCAGC 43127 Query 45881 AAGGGATACGCCGACACCCCCGTCACCAAATCCAAG 45916 || || || |||||| || || |||| ||||| Sbjct 43128 AACGGCTATGCCGACCGGCCGGTGGCCAAGGCCAAG 43163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189512661305604