Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_026597.1 Length=63334 Score E Sequences producing significant alignments: (Bits) Value seq208634 210 9e-50 >seq208634 Length=57299 Score = 210 bits (232), Expect = 9e-50 Identities = 356/514 (69%), Gaps = 10/514 (2%) Strand=Plus/Plus Query 47238 ACAACGACTGCGTGCCCGAAACCGAGTCGATGGGCGACAGCTCGGTAGATCTGATTGTCA 47297 |||||||||||||| |||| ||| || |||| ||| |||||| | ||||| |||| Sbjct 42655 ACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCA 42714 Query 47298 CCAGCATTCCGTTCTCAAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACA 47357 || || |||||| | ||| ||||| |||| |||| ||| |||||||||||||| Sbjct 42715 CCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACA 42774 Query 47358 CCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAACTGCTGCGCA 47417 |||||||| ||| |||||||||| |||||||| || || || ||||||||||| Sbjct 42775 CCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCG 42834 Query 47418 TCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACG 47477 | || | ||| || |||||| || ||||||||||||||| ||| | || | Sbjct 42835 TTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA 42894 Query 47478 TCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA-----GGCGATCTTTCA 47532 ||| ||| || ||| ||| |||| || | ||| || ||| ||| Sbjct 42895 TCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTTCC 42954 Query 47533 CGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCG 47592 | ||| || ||||| | ||| |||||||||| ||| | ||| || |||||||| Sbjct 42955 AG--CGC---CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTGCG 43009 Query 47593 GGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCCACCAAGAT 47652 || ||||||||||| || || ||||||||| | ||||| ||||| |||| | | || Sbjct 43010 CGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGCAT 43069 Query 47653 GGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCACAAACCGCAGACAGACAGGTCGAA 47712 |||| |||| ||||||||| | ||| | |||| | |||| ||| || | || Sbjct 43070 GGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCCGCCGCCCGCCGACCGATCGCAGCAA 43129 Query 47713 GGGATACGCCGACACCCCCGTCACCAAATCCAAG 47746 || || |||||| || || |||| ||||| Sbjct 43130 CGGCTATGCCGACCGGCCGGTGGCCAAGGCCAAG 43163 Score = 84.2 bits (92), Expect = 9e-12 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 48057 AAATGCACGTGTGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATAACCCGGTTCTCGA 48116 |||||||| ||||||| |||| | ||||||||| ||||| || || || | | Sbjct 43513 AAATGCACCTGTGCCCGCTGCAATACGACATCGTGGACCGCGCCATCGTCCAGTACACCG 43572 Query 48117 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 48176 | || ||||| | ||| | ||||| |||||||||||| |||||||| || || || Sbjct 43573 AGCCGGGCGAATGGGTCTATGACCCCTTCGGCGGGCTGATGACCGTGCCCTTCCGCGCGG 43632 Query 48177 TGAAACTTGGTCGGCGC---GGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGA-T 48232 | || || |||||| ||| || ||||| ||||| ||||||| |||| Sbjct 43633 TCAAGCT---GCGGCGCATAGGCATCGGGGTCGAACTGAACAAGGGCTACTGGCTCGACG 43689 Query 48233 GCTGTCAAGTATTTGCAAGCCGAAGAGCGCCGGCGCGACATGCCGAGCCTGTTCGAC 48289 |||| ||| || | | |||| ||||| || | || ||| |||||||||||| Sbjct 43690 GCTG-CAAATACGTCGAGGCCGCCCAGCGCGGGGTGGGCACGCCTAGCCTGTTCGAC 43745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201989865060590