Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_026604.1 Length=53636 Score E Sequences producing significant alignments: (Bits) Value seq208634 188 2e-43 >seq208634 Length=57299 Score = 188 bits (208), Expect = 2e-43 Identities = 321/462 (69%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 40970 CGTCAACAACGACTGCGTTCACGAAACCGAGAGAATGGCAGACGATTCGGTGGATCTGAT 41029 |||| ||||||||||||| ||| ||| ||||| || | |||||| | ||||| Sbjct 42650 CGTCCACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGAT 42709 Query 41030 TGTCACTAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGG 41089 ||||| || |||||| || ||| ||||| |||| |||| ||| ||||||||| Sbjct 42710 CGTCACCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGG 42769 Query 41090 CCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGCT 41149 ||||||||||||| ||| |||||||||| |||||||| || || || | ||||| Sbjct 42770 CCACACCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCT 42829 Query 41150 GCGCATCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGG 41209 |||| | || | ||||||||| ||| || ||||||||||||||| ||| | || Sbjct 42830 GCGCGTTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGG 42889 Query 41210 AAACGTCACCGGCGCCGGCGTGCCCACAGTGTCCCCGTTCCACGCCGA-GGCGATC---- 41264 | ||| ||| ||| | | || | || || | ||| || ||| | Sbjct 42890 CGGCATCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGA 42949 Query 41265 -TTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGT 41323 ||||| || || ||||| | ||| |||||||||| ||| | ||| || || Sbjct 42950 GTTCCAGCGC------CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGT 43003 Query 41324 GGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAAGACGCCAC 41383 |||||| || ||||||||||| || || ||||||||| | ||||| ||||| |||| | | Sbjct 43004 GGTGCGCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTC 43063 Query 41384 CAAGATGGG-TGTCGGCTCCCCGGAATACATTCTGCTGTTCC 41424 ||||| ||| ||| ||||||||| | ||| | |||| Sbjct 43064 GCGCATGGGCTGT-GGCGTGCCGGAATACCTGCTGATCTTCC 43104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171056392123032