Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq208634 208 2e-49 seq208635 156 1e-33 >seq208634 Length=57299 Score = 208 bits (230), Expect = 2e-49 Identities = 597/912 (65%), Gaps = 61/912 (7%) Strand=Plus/Minus Query 4472 ATGGCTGCCATTCTGGACGGCGGTAAGCTGACGCTTACCGGTGACGTCGGCGACTTCTAT 4531 |||||| ||||||||||||| |||||||||||| | || |||||||| || Sbjct 25147 ATGGCTTGCATTCTGGACGGCTCGAAGCTGACGCTTTCGGGCACGGTCGGCGATGACTGG 25088 Query 4532 TTCGGCGATGGCTTCACGCATTCCGATGTTGTCATTGCGCTAGCGCAGGTCGACGACGAA 4591 | ||||| | |||||| || || ||| | | ||||| ||| |||||||| | Sbjct 25087 TGGGGCGACGCCTTCACCTATGAGGACGTTCTGCTCGCGCTGGCGGCTGTCGACGATGCG 25028 Query 4592 GCCGCGCTGACGGTCTATTTGAACAGCGGCGGCGGGTATGCGTCGGAAGGCGCTGCAATC 4651 | | ||||| || || | ||| ||||| ||| ||| |||| || ||||| ||| Sbjct 25027 TCTGACCTGACCGTACATATCAACTCGGGCGGAGGGGGCGCGACGGAGGGTGCTGCCATC 24968 Query 4652 CATGCGCTGTTGTCCCGTCGCGCGGGGCAAACCGATGTCGTGGTTGATGGGGTTGCTGCA 4711 | ||||| || | |||| | |||| || || || || || || || | || || Sbjct 24967 AACGCGCTTCTGGCGGCTCGCACCGGGCGCACGGACGTGGTTGTCGAAGGCATCGCCGCC 24908 Query 4712 TCGGCCGCCTCGCTGATCGCGATGGCTGGCAACACTGTCACCATGTCTGCCGGCGCGGTG 4771 |||||||| || |||||||| ||||| ||| | || |||| |||| | | ||| || ||| Sbjct 24907 TCGGCCGCGTCACTGATCGCCATGGCGGGCGAGACGGTCAGCATGGCCGACGGTGCCGTG 24848 Query 4772 ATGATGATCCATGACCCAGCGGTGTTTACCGTCGGCAACTCCGACGATCACGCCAAGAGC 4831 ||||||||||| || || || | || || | || | | || ||||||||||||| Sbjct 24847 ATGATGATCCACGATCCCGCTGGCTTCACGATGGGGACCAGCGCCGATCACGCCAAGCAA 24788 Query 4832 GTTGAATATCTCGAGGCGCTCGCGACCTCCTACGCCCGGGTCTATGCCGACAAGTCTGGC 4891 | || || || || | || || |||| ||||| ||||| |||| ||| || ||| Sbjct 24787 ATCGAGGCGCTGGAAGCCTTGGCAACGGCCTATGCCCGCGTCTACGCCGCCAAATCCGGC 24728 Query 4892 AAGTCGCCGGAAGAGTGCCGCGCGA--TCATGAAGGCCGAGCGCTGGTTTTCGCCGGACG 4949 || || | || || |||| || ||||||| ||||||||||||| | | | || | Sbjct 24727 AAAACGACCGACGA--AGCGCGTGAAGTCATGAAAGCCGAGCGCTGGTATGCCGCCGATG 24670 Query 4950 ATGCGGTCTCGGAAGGTTTCGCAGATCGCGCCG-CCGA--AGCCCAGGCATCTGCCGTCG 5006 | ||| | | || || || || || ||| | ||| ||||| || | || || | Sbjct 24669 AGGCGATTGCCGAGGGCTTTGCCGA-CGCCAAGATCGAGCAGCCC--GCCGCCGCTGTGG 24613 Query 5007 CCGCTTTCGACTATCGCGCCTATGCGCATGCGCCGCAGCGTCTCAAGGCGCTCGCGAGCC 5066 | |||||||||| || || |||||||||| | | |||| ||| || Sbjct 24612 CGATGTTCGACTATCAGCAATACGCCCATGCGCCGCGG----AAATTGCGCGCGCAGGC- 24558 Query 5067 GCAAGAATTGGCGTCTGCCGGACGCTGATCAGAGGGCGGCCACGTCCGCTGCACCCCGTC 5126 |||||||||| || | || ||| |||||| | |||||| || ||| ||| Sbjct 24557 -AAAGAATTGGC-TC-----AAGGCCAATCCACAGGCGGCAAGGTCCGCCGCCCCCGGTC 24505 Query 5127 AAAAAGAGGAGCCATCCATGACGGACAAGGAACGGGCGGACCAGCTGGCCGCCGAACTCG 5186 | | ||||| | ||||| |||||| | |||||| || Sbjct 24504 AGA---AGGAGACGAAAATGACCGACAAGACCCCGGCGGA------------------CG 24466 Query 5187 CAACCATGCGCACCCGCGCCGAAACCGCTGAAACCGCCGCGGCGACCGCCAGCGATAATG 5246 ||| | || |||||| | | | | || ||| | ||| | | | Sbjct 24465 CAA--------AGCC-CGCCGA------TCAGCCTGACGTGGCAAAGGCCCAGGCCGACG 24421 Query 5247 CGGTCAAGGCCGATCGCGAACGCCGTGCCGCCATCATGGCCCTCGACGAAGCGAAGGGCC 5306 ||||||||||||| || || ||||| || || ||||||||||| || || ||||| |||| Sbjct 24420 CGGTCAAGGCCGACCGTGAGCGCCGCGCGGCAATCATGGCCCTGGATGAGGCGAAAGGCC 24361 Query 5307 GCGAGCAGCTCGCCGATCATCTCTACGCCACCGGCGCCA---GCGTCGATTCCGCCAAGG 5363 ||||| || ||||| || ||||| |||| | || | |||||| | | ||||| Sbjct 24360 GCGAGGCACTTGCCGAACACCTCTATGCCAGCACCGAAATGTCCGTCGACGCGGTCAAGG 24301 Query 5364 CCACGCTTGCCG 5375 |||| || |||| Sbjct 24300 CCACCCTGGCCG 24289 >seq208635 Length=8721 Score = 156 bits (172), Expect = 1e-33 Identities = 328/478 (69%), Gaps = 31/478 (6%) Strand=Plus/Plus Query 22375 ATCGGGGTCGGTGAGGACGAAATCCACGCGGTGATCGACGTGGAAACCGGCAACGGCCAG 22434 ||||| ||||| |||||||| | | ||| |||||||| || || || | | |||| Sbjct 7680 ATCGGCGTCGGCGAGGACGAGGTGCGCGCCGTGATCGAGGTCGAGACGGCCGGCGGC--- 7736 Query 22435 GGGTTCGATTCCACC--GGGCGCCCGAAGATGCTGTTCGAGCCGCACATCTTCTACCGCG 22492 || ||||| | | | || ||||||||||||||||||||||||||| |||| || Sbjct 7737 GGCTTCGA--CAAGCAAGGACGCCCGAAGATGCTGTTCGAGCCGCACCGGTTCTGGGTCG 7794 Query 22493 AGGTGCCGCGGGCGTTGCGCGACAAGGCGATCGCCGCCG---------GTCTCGCCTATC 22543 || || ||| | | || ||| || || | ||||| | |||||||||| Sbjct 7795 AGCTGG-GCGAGGG--GC-CGA--AGCGGACCCGCGCCGAAGAACAGGGCCTCGCCTATC 7848 Query 22544 CGTCCTGGCGCCGGAAT---TATCCGGCCAACAGCTATCCGCGCCTGGTCGAGGCCATGG 22600 ||| || || ||||| | |||||||||| || |||| ||| ||| Sbjct 7849 GCAAATGGGGCACCAAGCCCTATCCCTCGGACAGCTATCCCCGGCTGGCGCTGGCGATGC 7908 Query 22601 CGATCGACGCCACCGCCGCGCTGCGCTCGGCCTCCTGGGGGCTCGGCCAGGTGATGGGGT 22660 ||||||||||| ||| ||||||||| || |||||||| ||||||||| | ||||| Sbjct 7909 AGATCGACGCCAACGCGGCGCTGCGCAGCGCGTCCTGGGGCCTCGGCCAGATCATGGGAA 7968 Query 22661 TCAACCATAAGATGGCCGGTTTCGACACCGTCCAGC-AGATGGTGCGGGCGTTCATGGAG 22719 |||||| ||| ||| || |||| | || || || | |||||| | ||| || Sbjct 7969 GCAACCACAAGGCGGCGGGCTTCG-CCTCGGCCGGCGACATGGTGGCGATCTTCTGCGAC 8027 Query 22720 GATGAGGACCGG--CATCTGGAGGCGATGGTCGCGTTCATCCAGTCGGCTGGGCTCGATG 22777 ||| |||| || || ||||| ||| || ||||||| || | | || || | Sbjct 8028 AGCGAG--CCGGCACAGCTCGAGGCCATGATCCGGTTCATCGAGGCCGAGAACCTGGACG 8085 Query 22778 ACGAAATCCGCCGGCACGACTGGTCGGGCTTCGCGCGCGGCTACAACGGCGCCGGCTA 22835 | || | | || ||||||||||| ||||||||||| |||||||||||| |||| || Sbjct 8086 ATGACCTGAGACGTCACGACTGGTCCGGCTTCGCGCGGGGCTACAACGGCCCCGGGTA 8143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152430975047208