Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq207413 129 2e-24 seq203897 129 2e-24 seq203896 129 2e-24 seq199157 129 2e-24 seq211828 93.3 1e-13 >seq207413 Length=2163 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 905 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 846 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 845 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 789 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 788 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 730 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 729 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 670 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 669 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 611 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 610 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 552 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 551 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 492 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 491 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 443 >seq203897 Length=2989 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 2523 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 2464 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 2463 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 2407 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 2406 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 2348 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 2347 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 2288 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 2287 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 2229 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 2228 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 2170 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 2169 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 2110 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 2109 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 2061 >seq203896 Length=2920 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 2454 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 2395 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 2394 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 2338 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 2337 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 2279 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 2278 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 2219 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 2218 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 2160 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 2159 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 2101 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 2100 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 2041 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 2040 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1992 >seq199157 Length=2194 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 1290 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 1349 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 1350 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 1406 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 1407 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTTATCGACAC-CTACGT 1465 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 1466 CAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCTGTCAA 1525 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 1526 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 1584 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 1585 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 1643 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 1644 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 1703 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 1704 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1752 >seq211828 Length=4713 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 1924 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 1983 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 1984 GCCGCCAACGCGATCCAGTTCACCGT 2009 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 1523 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 1582 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 1583 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 1642 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 1643 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 1674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1583767666712490