Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_027993.1 Length=43587 Score E Sequences producing significant alignments: (Bits) Value seq179470 87.8 5e-13 >seq179470 Length=35510 Score = 87.8 bits (96), Expect = 5e-13 Identities = 186/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 27055 GCAACCTGCTCCCCAAAGATGACTGGAGGGCGGCACTCGCTGATGAGGTCGAGGAAGACC 27114 ||||||||||| || |||| || | |||||||| || | |||| ||||| | Sbjct 516 GCAACCTGCTCGCCGAAGACGAGTTCCGGGCGGCAGGCGGCAACGAGGCGCAGGAAAGCG 575 Query 27115 GGCGCGAGGTGTCTCGGGTCGAACTGTCCGAGTTGC-TTTCCC-GCCGCGCTAAACGGTT 27172 || ||||| || | ||| |||||| |||| |||||| ||| ||| || || | Sbjct 576 GGGGCGAGATGGCGGTCATCGTCCTGTCC--CTTGCGTTTCCCGGCCTGGCTGAAGGGCT 633 Query 27173 GGCAAGGCGGGCTTCCCGTCCAGAGAGGCGCATCTTCCGGAACTCCCGCAAGTCTGAGCG 27232 |||| ||||| ||| ||||||| ||| || || | || || || || | || | Sbjct 634 GGCAGGGCGGCGATCCGGTCCAGACCGGCCGGTCCTCGGCCACGCCAGCGAGGCGCAGTG 693 Query 27233 CGAGAGGCCAGCCGCCGATACCCGCGAAAAAATGACACTGGGTGAACCCGTCAAGGTCTT 27292 || ||||| |||||||| || ||||| |||||||| || | ||| ||| ||||| Sbjct 694 CGTAGGGCCAACCGCCGATCCCGGCGAAGAAATGACATTGCGCGAAGCCGCGCAGGTCGG 753 Query 27293 CTGGCTTAACTTCGGTAATGCTTCTTTCATCTAC 27326 |||| || ||| |||| || ||| || || Sbjct 754 ACGGCTCCACGTCGAGAATGGATCGTTCGTCCAC 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138985313268516