Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq209919 105 2e-17 seq223622 102 2e-16 seq223142 98.7 3e-15 seq194102 93.3 1e-13 seq205598 87.8 5e-12 seq205597 87.8 5e-12 seq201489 87.8 5e-12 seq220036 84.2 7e-11 >seq209919 Length=3227 Score = 105 bits (116), Expect = 2e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || ||||||||||| || || || || || || | Sbjct 2363 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2304 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || || || ||||| || || ||||| ||||| || Sbjct 2303 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 2244 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || |||| ||||||| || || Sbjct 2243 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCAGATGACTCGACC 2184 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| ||||| || || || || || ||||||||| Sbjct 2183 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 2136 >seq223622 Length=3914 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 2369 CATACCACCACGGAGGCGGAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 2428 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| ||||| ||||| ||||| Sbjct 2429 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGG 2488 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || ||||| || || |||| || | || Sbjct 2489 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTTACGTTCTCGATCGTGTCGCTCGACTC 2548 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 2549 AACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 2599 >seq223142 Length=9055 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || || || || || | | || || || || Sbjct 6343 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCC 6402 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||| ||||||||||| || || || || || ||| Sbjct 6403 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 6462 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || || ||| || || || || | ||| Sbjct 6463 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTC 6522 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 6523 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 6554 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||||| || || || || || || Sbjct 6773 CATGCCGCCACGAAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 6832 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||||||||| Sbjct 6833 GGCGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 6892 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || | || || | || Sbjct 6893 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATTGTGTCGGACGACTC 6952 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || |||| ||||| ||||| || || || || || ||||||||| Sbjct 6953 GACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 7004 >seq194102 Length=976 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || || ||||| ||||| || || || || | | || || || || Sbjct 74 AGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 133 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||||||||| ||||| || || || ||| Sbjct 134 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 193 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || || | ||| | ||| || || || || || | || Sbjct 194 TGGATCTTCTGCTTCACGTTCTCGATGGTATC-GCTGGACTCGACCTCGAGGGTGATAGT 252 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 253 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 285 >seq205598 Length=5571 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 5456 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 5515 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 5516 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 5546 >seq205597 Length=5572 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 5457 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 5516 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 5517 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 5547 >seq201489 Length=6051 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 3699 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 3758 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 3759 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 3789 >seq220036 Length=2680 Score = 84.2 bits (92), Expect = 7e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 76 CATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 135 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 136 GGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 195 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || |||| || | || Sbjct 196 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATCGTGTCGCTCGACTC 255 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || || || || ||||| Sbjct 256 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510896262229046