Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq196771 114 1e-20 seq219361 82.4 6e-11 seq184032 82.4 6e-11 seq184031 82.4 6e-11 >seq196771 Length=22834 Score = 114 bits (126), Expect = 1e-20 Identities = 253/374 (68%), Gaps = 4/374 (1%) Strand=Plus/Minus Query 29828 ATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACG 29887 |||| ||| ||| | ||| | |||| | | | || || |||| || | | |||| | Sbjct 20282 ATCCGCAGCCGGGGCAGGGGGCGCGGCTGGCGCGCCAGTTGCGTCTGCACCTGGTCCAGG 20223 Query 29888 TTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTC-TAGCCC 29946 | | |||||||| || || || |||| | |||||| || || |||| || || ||| Sbjct 20222 TGGTTCAGGTAGATATGCGCATCGCCCATGGTGTGGATGAAGTCGCCCGCCTCGTATCCC 20163 Query 29947 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 30006 | | || || |||| ||| | ||| || || | ||| ||||||||| || || ||||| Sbjct 20162 G-TCACATGGGCCAGCATATGCGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACCCC 20104 Query 30007 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTA 30066 || |||||| |||| | |||||| ||||| ||| ||| ||||| ||| Sbjct 20103 CAGGAACATGTCGGCCGAGCGCTGGTAAAGCTGCAGCGACAGCCGGCCGTCCTGCACCCG 20044 Query 30067 AAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 | ||| |||| | ||||| || || || |||||| || ||| ||| ||||||||| Sbjct 20043 CACCTGCCACAGCGTATGGCAGGGCGGCAGGGCCATGCGGTCCACCTCTCCGGGGTTCCA 19984 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30186 ||| | ||||| | || | || || | || | |||| ||||||| ||| | Sbjct 19983 GGCCGAGACGATCAGCCGGCGTGAATCGGGCGTCTTGCGGATGCGGTCCAC-CAGTTCGG 19925 Query 30187 C-AGCTGATCCACC 30199 | | |||||||||| Sbjct 19924 CGATCTGATCCACC 19911 >seq219361 Length=4201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 819 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 877 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 878 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 935 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 936 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 967 >seq184032 Length=1086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 233 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 175 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 174 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 117 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 116 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 85 >seq184031 Length=1083 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405198785788344