Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq223622 102 5e-17 seq223142 100 2e-16 seq203637 91.5 9e-14 seq190944 87.8 1e-12 seq207513 86.0 4e-12 seq194102 86.0 4e-12 seq215275 82.4 5e-11 >seq223622 Length=3914 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 1614 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1673 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || || || || || | |||||| |||||||| Sbjct 1674 GGCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG 1733 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 1734 GGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCAGAGCTCT 1792 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| || || || ||||| | ||| || || || ||||||||| Sbjct 1793 CGACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 1845 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || | || || || |||| || || || Sbjct 2397 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 2456 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 2457 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 2516 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || ||| ||| | || ||||| ||| ||| || || | ||| || || || || | Sbjct 2517 TGCTTT-ACGTTCTCGATCGTGTCGCTCG-ACTCAACCTCGAGGGTGATGGTCTTGCCCG 2574 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || ||||| |||||||| Sbjct 2575 TGAGGGTCTTGACAAAGATCTGCAT 2599 >seq223142 Length=9055 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 4855 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 4914 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || ||||| |||| || || || || ||||| || || | ||||| ||||| || Sbjct 4915 GGCGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 4974 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| ||||| || || ||| | || ||||| ||||| Sbjct 4975 AGGGATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGCTCT 5033 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| ||||| || ||||| | ||| || || || |||||||| Sbjct 5034 CGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 5085 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 6327 GCCGCCGCGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 6386 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || || || || || | |||||| || || || || Sbjct 6387 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 6446 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| || | Sbjct 6447 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGCTTTCGA 6505 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || ||||| | ||| || || || ||||||||| Sbjct 6506 CCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 6555 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||| || | || | ||||| ||| |||||| || ||||| || || | Sbjct 6776 GCCGCCACGAAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 6835 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| || || || || Sbjct 6836 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 6895 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | |||||||| ||| | Sbjct 6896 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATTGTGTCGGACGACTCGA 6954 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGATTG 34714 | || | ||| || || || ||||| | || ||||| || ||||||| ||||| ||| Sbjct 6955 CCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTGTTGGTTG 7012 >seq203637 Length=1734 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| || |||||| || ||||| || || | Sbjct 1545 GCCGCCACGCAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1486 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || ||||| || || || | ||||| || || || || Sbjct 1485 GAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGG 1426 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||||| || ||| | || ||||| |||||||| Sbjct 1425 AATACCCTCCTTGTCCTGAATCTTTTG-CTTGACGTTCTCGATCGTGTCCGAGCTCTCCA 1367 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 1366 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1318 >seq190944 Length=484 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| || |||||| || ||||| || || Sbjct 457 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 398 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | |||||| |||||||| Sbjct 397 GGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 338 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTC 34655 || | ||||||||||| |||||| || || | || || || | ||| Sbjct 337 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATAGTATCGCTGGACTC 278 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || ||||| || ||||| | ||| || ||||| |||||||| Sbjct 277 GACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 227 >seq207513 Length=1179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 1032 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 973 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || |||||||| || | ||||| ||||| || || Sbjct 972 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGG 913 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| | || ||||| ||| | Sbjct 912 GATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATGGTGTCGGACGACTCGA 854 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGATTG 34714 | || | ||| || || || || || | || ||||| || || |||| ||||| ||| Sbjct 853 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTGTTGGTTG 796 >seq194102 Length=976 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| ||| ||||||||| ||||| || || | Sbjct 58 GCCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGC 117 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| || || || || Sbjct 118 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 177 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || || || | ||| | Sbjct 178 AATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTATCGCTGGACTCGA 236 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATTG 34714 | || | ||| || || || ||||| | || ||||| || |||||||| |||| ||| Sbjct 237 CCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATAGTTGGTTG 294 >seq215275 Length=6875 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||| || | || | |||||||| |||||| || ||||| || || Sbjct 4252 GTTGCCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 4193 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | ||||| |||||||| Sbjct 4192 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGG 4133 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| | || Sbjct 4132 TGGAATGCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTCTCGATCGTGTCGCTGGACT 4074 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || ||||| || ||||| | || || || || |||||||| Sbjct 4073 CGACCTCGAGAGTAATCGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 4022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313868539352306