Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq184921 288 5e-73 >seq184921 Length=9366 Score = 288 bits (318), Expect = 5e-73 Identities = 539/788 (68%), Gaps = 13/788 (2%) Strand=Plus/Minus Query 64067 ACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 64126 |||||||| | | || ||| ||| ||||| ||||| || || | |||||| | Sbjct 5033 ACCGGCTCGCTGGGGCTCGACATCGCGCTGGGGATCGGCGGCCTGCCCAAGGGCCGCATC 4974 Query 64127 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 64186 | || |||| |||||| ||| || || ||| | || ||| || || | ||||||| Sbjct 4973 ATCGAGATCTTCGGCCCGGAAAGCTCGGGCAAGACCACGCTGACGCTGCATGTGGTGGCC 4914 Query 64187 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 64246 | | |||||| || ||| | ||||| | ||||||| || ||| | ||||| || Sbjct 4913 GAGGAACAGAAGAAGGGCGGCGTCTGCGCCTTCGTCGACGCCGAACACGCGCTGGATCCG 4854 Query 64247 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACT 64306 | ||||||||| ||| || ||| |||| ||| | ||| || | ||||| ||||| Sbjct 4853 CAATACGCCAAGAAGCTGGGCGTGAACCTGGACGAACTCCTGATCAGCCAGCCCGACACG 4794 Query 64307 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 64366 ||||| ||||| ||||||||||| ||| || || || |||| | || | | || Sbjct 4793 GGCGAACAGGCGCTGGAGATCGTCGACACGCTGGTGCGCTCGGGCGCGGTGAACCTGGTG 4734 Query 64367 GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 64426 || || ||||| || ||||| ||| ||| ||||| |||| |||||||| || ||| Sbjct 4733 GTGGTCGACTCGGTCGCGGCGCTGACGCCCAAGTCCGAGATCGAGGGCGACATGGGCGAC 4674 Query 64427 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACC 64486 | || | ||| || || ||||| ||| ||||| ||||||||||| |||| || | Sbjct 4673 ATGCAGATGGGCAGCCAGGCCCGCCTGATGAGCCAGGCGATGCGCAAGCTGACCGCCAGC 4614 Query 64487 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 64546 ||| | | | ||| || | ||| |||||||| | ||| ||||||||| | Sbjct 4613 ATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGG---C 4557 Query 64547 GTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCC 64603 ||| | ||| |||| || ||||| || || ||||| || ||| |||||||||| Sbjct 4556 GTGATGTTCGGCAACCCG---GAAACCACGACCGGGGGCAACGCGCTGAAGTTCTACGCC 4500 Query 64604 TCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGC 64663 || ||||| | || |||| |||| || | | ||||| | || |||| |||||| Sbjct 4499 TCGGTCCGGCTCGACATCCGCCGCACCGGCGCGATCAAGGACCGGGACGAGGTGGTCGGC 4440 Query 64664 AACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAG 64723 ||| |||||| || ||||| |||||||||||| | || ||||| |||| | | |||| Sbjct 4439 AACGCCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCCGCCAGGTCGAG 4380 Query 64724 TTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTG 64783 ||| | || |||| || ||||| ||||| | | ||| | ||||||||| | | Sbjct 4379 TTCGACATCATGTATGGCGAGGGGATCTCCAAGGTCGGCGAGTTGATCGACCTGGGCATC 4320 Query 64784 TCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACG--TCG 64841 | ||| |||| |||| ||||| |||||| || || ||| ||||| ||| Sbjct 4319 AAGGCCGGCGTGGTCGAGAAATCGGGGTCCTGGTATTCCTATGGCGAC--GAACGTATCG 4262 Query 64842 CCCAGGGC 64849 ||||||| Sbjct 4261 GCCAGGGC 4254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232166279690702