Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq31122 199 1e-46 seq184192 82.4 2e-11 >seq31122 Length=1901 Score = 199 bits (220), Expect = 1e-46 Identities = 246/329 (75%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 40090 GCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGAT 40149 ||||||||| |||||| | ||||||||| ||||| ||||| ||| ||| |||| Sbjct 119 GCCGAAGGTGATGATCTGGCCCACCTTGTCGCGGCCGTATTTCTCCTGGACATACTGGAT 178 Query 40150 GACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 ||||| |||| || || || |||||||||||| | ||| ||||| ||||| ||| Sbjct 179 CACCTCCTCGCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACCCGC 236 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT-GCTCCAGTGGATCGAGGTCGGTGAT 40266 || ||||||||||| || ||||| | || | || || | || || |||||||||||||| Sbjct 237 TCCGGGTTCAGGAAGCGTTCGAACAGCAGGCTGTAGCGCAAG-GGGTCGAGGTCGGTGAT 295 Query 40267 CCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACA 40325 || ||| ||||| ||||||||||| || ||||||| ||||| || |||||| | Sbjct 296 GGTCAGCGCA-TAGGCCACCAGCGAACCCGCGCCCGAGCCCCGCCCCGGTCCGACCGGGA 354 Query 40326 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGC 40385 ||||| ||||||||||| |||||| ||||| |||| |||||| || || |||| Sbjct 355 TGCCGTGGTCCTTGGCCCATTTGATGAAATCGGCCACGATCAGGAAATATCCGGGAAAGC 414 Query 40386 CCATCTGGATGATCATGTCGATCTCGTAC 40414 ||||||| ||| ||| | | |||| || Sbjct 415 CCATCTGCTCGATGATGCCCAGCTCGAAC 443 >seq184192 Length=9384 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267 ||||||||||| | |||| |||||||||||||||| || |||| ||||| || Sbjct 8672 CTCCTTGGCCATCTCTTCGGCGATCTTCTTGCCCATGGCGCGGCGCAAGAGGTCCGCGCC 8731 Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327 |||||| ||||| || | || ||| || || | |||||| ||||| |||| ||| Sbjct 8732 GCCCAGAGAATAGCCCGCCATGACCTGGGCGATCTGCATCACCTGTTCCTGATAGACGAT 8791 Query 39328 GAGCCCGTACGTCGGGTCCAGGATC 39352 || || | |||| | |||||||| Sbjct 8792 GATGCCCTGCGTCTCGGCCAGGATC 8816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159978800849868