Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq197527 118 7e-22 seq196825 111 1e-19 >seq197527 Length=40067 Score = 118 bits (130), Expect = 7e-22 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5446 CCGAAATTGCGATGTGGTTCCGCATTCCGCCCCACATGATCGGCGACACCGAGAAGTCCA 5505 |||| || || |||| ||| | | |||||||||||||||||||||||||||||||||| Sbjct 27324 CCGACATCGCCATGTTCTTCGGGGTCCCGCCCCACATGATCGGCGACACCGAGAAGTCCA 27265 Query 5506 CATCGTGGGGCACCGGCATTGAGCAGCAGTCGATTGGGTTCGTGACATACACGCT 5560 | |||||||||||||| |||||||||||||| || || || | |||||||| Sbjct 27264 CGAGCTGGGGCACCGGCATCGAGCAGCAGTCGATCGGCTTTGTCGCCTACACGCT 27210 >seq196825 Length=18748 Score = 111 bits (122), Expect = 1e-19 Identities = 188/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 96898 CATCTGCCGGTACCGGTCATCCATCTCCACGGTGAGCCACCGCAGCGTCTTAACCGCCT- 96956 |||| | || || || || |||||||| || || ||| ||||| | ||||||| Sbjct 17929 CATCCGGCGATAGCGCTCCTCCATCTCTCCGACGACCCATTTCAGCGCCACGACCGCCTT 17988 Query 96957 CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAGTT 97016 | ||||| |||||||| |||||| || ||| || || || || | ||| | | || Sbjct 17989 CTTCGGG-TCGGTGACGACCGGCGACAGAAGATGCGGAATCCCATCGTAAACAGACAATT 18047 Query 97017 CCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGG-ATTGGCTCGGTAGAGC 97075 ||| |||||| |||||||||||||| || | | | || || | ||| ||||||| Sbjct 18048 CCAGCATCTTGGGGTCGATCATGATCAGCCGGCACTGCTCGGGTGTCAGCT-TGTAGAGC 18106 Query 97076 ATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACC 97135 | | | | ||| | ||||||| | ||||| || || ||||||| || || | | Sbjct 18107 AGGCTCAGGATCATGGTGTTGATGGCGACCGACTTGCCCGAGCCGGTGGTCCCCGCGATC 18166 Query 97136 AGCAGGTGCGGCATTTTGGCCAGGTTC 97162 |||||||| ||||| |||||||||||| Sbjct 18167 AGCAGGTGGGGCATCTTGGCCAGGTTC 18193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 96698 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCG 96757 || |||| ||||| || || |||||||||||||||| || ||| || || ||| || Sbjct 17615 CCGGTGATGACATCGACCGAAGGCCGCTGCGTCGCCATGATGAGGTGGATGCCGCTGGCC 17674 Query 96758 CGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATC 96817 |||||| |||| || | || |||| ||||||| ||| |||| || ||||| Sbjct 17675 CGCGCCATCTGCGCAAGCCGTTGAATGCACGCCTCGATTTC---CTTGCCCGCGACCATC 17731 Query 96818 ATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGA 96860 || ||||| || | |||||||| | || ||||| ||||||| Sbjct 17732 ATCAGGTCGGCCATCTCGTCGACGATGACGACGATATAGGGGA 17774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350274264616722