Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq31122 170 6e-38 >seq31122 Length=1901 Score = 170 bits (188), Expect = 6e-38 Identities = 228/315 (72%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 39009 GATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39068 |||||| | |||||||| | |||||| ||||| ||| ||| ||||||| || | || Sbjct 131 GATCTGGCCCACCTTGTCGCGGCCGTATTTCTCCTGGACATACTGGATCACCTCCTCGCG 190 Query 39069 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGG 39126 |||| ||| |||||||||||| | ||| ||||| || || ||||| ||||||||| Sbjct 191 GCGATC--CATGCAGAAGTCGATGTCGAAGTCCGGCATCGACACCCGCTCCGGGTTCAGG 248 Query 39127 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39186 || || ||||| | || | || | | |||||| ||||||||||| || || || Sbjct 249 AAGCGTTCGAACAGCAGGCTGTAGCGCAAGGGGTCGAGGTCGGTGATGGTCAGCGCATAG 308 Query 39187 GCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTC 39246 || ||||||| || || | ||||| ||||| || |||||| | ||||| ||||| Sbjct 309 GCCACCAGCGAACCCGCGCCCGAGCCCCGCCCCGGTCCGACCGGGATGCCGTGGTCCTTG 368 Query 39247 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39306 ||||| |||||| ||||| |||| ||||| || || || |||||||| | ||| Sbjct 369 GCCCATTTGATGAAATCGGCCACGATCAGGAAATATCCGGGAAAGCCCATCTGCTCGATG 428 Query 39307 ATGTCGATCTCGTAC 39321 ||| | | |||| || Sbjct 429 ATGCCCAGCTCGAAC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159289443398124