Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028910.1 Length=55617 Score E Sequences producing significant alignments: (Bits) Value seq208634 197 5e-46 >seq208634 Length=57299 Score = 197 bits (218), Expect = 5e-46 Identities = 393/581 (68%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 42575 AGGCGCTGCAACGCTCCATCGGGTGCGAGCGCATCGAAGCATCCGGCGAGGGGTGGGTGT 42634 |||||||| ||| || | || |||||| |||| || || ||| || | | Sbjct 42589 AGGCGCTGGTCCGCGCCTTGGGCGTCGAGCGGGTCGAGGCCTCGGGCCCGGACTATCGCT 42648 Query 42635 TCGTCAACAACGACTGCGTACTCGAAACCGAGAGAATGGCAGACGATTCGGTGGATCTGA 42694 |||| ||||||||||||| ||| ||| ||||| || | |||||| | |||| Sbjct 42649 GCGTCCACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGA 42708 Query 42695 TTGTCACCAGTATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCG 42754 | |||||| || |||||| || ||| ||||| |||| |||| ||| |||||||| Sbjct 42709 TCGTCACCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCG 42768 Query 42755 GCCACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGC 42814 |||||||||||||| ||| |||||||||| |||||||| || || || | |||| Sbjct 42769 GCCACACCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGC 42828 Query 42815 TGCGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCG 42874 ||||| | || | ||| || |||||| || ||||||||||||||| ||| | | Sbjct 42829 TGCGCGTTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGG 42888 Query 42875 GCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTCCACGCCGA-GGCGATC--- 42930 || | ||| ||| ||| | | ||| | || || | ||| || ||| | Sbjct 42889 GCGGCATCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCG 42948 Query 42931 --TTCCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACCGATG 42988 ||||| || || ||||| | ||| |||||||||| ||| || || || | Sbjct 42949 AGTTCCAGCGC------CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACG 43002 Query 42989 TGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGACGCCA 43048 ||||||| || ||||||||||| || || ||||||||| | ||||| ||||| |||| | Sbjct 43003 TGGTGCGCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCT 43062 Query 43049 CCAAGATGGGGGTCGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACAGACA 43108 | ||||| ||| ||||||||| | ||| | |||| |||| ||| || Sbjct 43063 CGCGCATGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCCGCCGCCCGCCGACCGATC 43122 Query 43109 GGTCGAAGGGATACGCCGACACACCCGTCGCCAAATCCAAG 43149 | || || || |||||| || || ||||| ||||| Sbjct 43123 GCAGCAACGGCTATGCCGACCGGCCGGTGGCCAAGGCCAAG 43163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177378693567036