Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq208634 197 5e-46 >seq208634 Length=57299 Score = 197 bits (218), Expect = 5e-46 Identities = 319/456 (70%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 45570 ACAACGACTGCGTTCACGAAACCAAGAGCATGGCAGACGATTCGGTGGATCTGATTGTCA 45629 ||||||||||||| ||| ||| |||||| || | |||||| | ||||| |||| Sbjct 42655 ACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCA 42714 Query 45630 CCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACA 45689 || || |||||| || ||| ||||| |||| |||| ||| |||||||||||||| Sbjct 42715 CCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACA 42774 Query 45690 CCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCA 45749 |||||||| ||| ||| |||||||||||||||| || || || | ||||||||| Sbjct 42775 CCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCG 42834 Query 45750 TCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGAAACG 45809 | || ||||||||| ||| || ||||||||||||||| ||| | || | Sbjct 42835 TTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA 42894 Query 45810 TCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGCCGA-GGCGATC-----TTCC 45863 ||| ||| ||| | | || | || || | ||| || ||| | |||| Sbjct 42895 TCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTTCC 42954 Query 45864 ACGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTCACCGATGTGGTCC 45923 | ||| || ||||| | ||| |||||||||| ||| || ||| || ||||| | Sbjct 42955 A---GCGC---CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTGC 43008 Query 45924 GGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGA 45983 | || ||||||||||| || || ||||||||| ||||||| ||||| |||| | | | Sbjct 43009 GCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGCA 43068 Query 45984 TGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCC 46019 ||||| ||| ||||||||| | ||| | |||| Sbjct 43069 TGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCC 43104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190256273741976