Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq196825 111 1e-19 >seq196825 Length=18748 Score = 111 bits (122), Expect = 1e-19 Identities = 188/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 97564 CATCTGCCGGTACCGGTCATCCATCTCCACGGTGAGCCACCGCAGCGTCTTAACCGCCT- 97622 |||| | || || || || |||||||| || || ||| ||||| | ||||||| Sbjct 17929 CATCCGGCGATAGCGCTCCTCCATCTCTCCGACGACCCATTTCAGCGCCACGACCGCCTT 17988 Query 97623 CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAGTT 97682 | ||||| |||||||| |||||| || ||| || || || || | ||| | | || Sbjct 17989 CTTCGGG-TCGGTGACGACCGGCGACAGAAGATGCGGAATCCCATCGTAAACAGACAATT 18047 Query 97683 CCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGG-ATTGGCTCGGTAGAGC 97741 ||| |||||| |||||||||||||| || | | | || || | ||| ||||||| Sbjct 18048 CCAGCATCTTGGGGTCGATCATGATCAGCCGGCACTGCTCGGGTGTCAGCT-TGTAGAGC 18106 Query 97742 ATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACC 97801 | | | | ||| | ||||||| | ||||| || || ||||||| || || | | Sbjct 18107 AGGCTCAGGATCATGGTGTTGATGGCGACCGACTTGCCCGAGCCGGTGGTCCCCGCGATC 18166 Query 97802 AGCAGGTGCGGCATTTTGGCCAGGTTC 97828 |||||||| ||||| |||||||||||| Sbjct 18167 AGCAGGTGGGGCATCTTGGCCAGGTTC 18193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 97364 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCG 97423 || |||| ||||| || || |||||||||||||||| || ||| || || ||| || Sbjct 17615 CCGGTGATGACATCGACCGAAGGCCGCTGCGTCGCCATGATGAGGTGGATGCCGCTGGCC 17674 Query 97424 CGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATC 97483 |||||| |||| || | || |||| ||||||| ||| |||| || ||||| Sbjct 17675 CGCGCCATCTGCGCAAGCCGTTGAATGCACGCCTCGATTTC---CTTGCCCGCGACCATC 17731 Query 97484 ATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGA 97526 || ||||| || | |||||||| | || ||||| ||||||| Sbjct 17732 ATCAGGTCGGCCATCTCGTCGACGATGACGACGATATAGGGGA 17774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353350624991450