Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028954.1 Length=36065 Score E Sequences producing significant alignments: (Bits) Value seq178390 138 3e-28 >seq178390 Length=32315 Score = 138 bits (152), Expect = 3e-28 Identities = 364/541 (67%), Gaps = 31/541 (6%) Strand=Plus/Plus Query 15288 CTATGCCGCCGACTGGTCCGAATATCATTCG--CACC------GCGACGGCGG--GC-AG 15336 ||| |||||||||||||| ||||| |||| |||| |||||||| | || | Sbjct 20285 CTACGCCGCCGACTGGTCGGAATAC--TTCGGGCACCAGCCGGGCGACGGCAGCGGCGAC 20342 Query 15337 GTCTATTTCCACCTTGATCCGCTGTGGGCTTC-GCCTTCGGTCGATTTCGTGGGGATTGA 15395 || | |||||||| || ||||| ||| | ||| | |||||||| | | ||| || Sbjct 20343 GTGTTCTTCCACCTCGACCCGCTCTGGTCGGATGCCAACA-TCGATTTCATCGCGATCGA 20401 Query 15396 TAACTACCTGCCTTTGTCGGACTGGCGGCCCGGGGCCGATCATGCCGACTATGACCCCGA 15455 || ||| |||| | || ||||||||| |||| ||| ||||||||| | |||| Sbjct 20402 CAATTACATGCCGCTCTCCGACTGGCGGGACGGGTTCGAGCATGCCGACGCGG---CCGA 20458 Query 15456 AACCGGCGTGACGTCGCCCTATTGTCTGGAC-TATCTGAAAGGCCAGATCGAGGGCGGCG 15514 ||| | | || |||| | | |||| |||||| | | | |||| |||||||| Sbjct 20459 G---GGCTGGCCTGCGATCTAT-GACCGGACCTATCTGCAGAGGAACATCGCGGGCGGCG 20514 Query 15515 AATATTGGGATTATTACTATGCGTCCCAAGCTGACCGCGACCGGCAGATTCGCACCCCGA 15574 || | || | | |||||| || || ||| | | |||| | |||||||||| Sbjct 20515 AAGGCTTCGACTGGTTCTATGCCTCTGCCGCCGACAGATCCGCGCAGGTCCGCACCCCGA 20574 Query 15575 TTTCCGATCTGGGCTATGGTGAA-CATTGGGTGTTCCGCCAGAAGGCAATCCGCGACTGG 15633 | ||||| | || || || | |||||||||||| | |||| | |||| |||| Sbjct 20575 TCACCGATG-GCGCGGCGGCCAAGCCGTGGGTGTTCCGCTACAAGGACCTGCGCGCCTGG 20633 Query 15634 TGGTCCAGCAATCACCACAACCGGCCCGGCGGGATCCGGGCGGGCGCGAAA---ACGTCC 15690 ||||| | | ||| |||| || || || ||| | || | ||| | | ||| | Sbjct 20634 TGGTCGAACCCGCACTACAATCGCCCGGGTGGGGT---GGAGAGCGGCACACCGACGGCG 20690 Query 15691 TGGACTCCGGGTTCCAAGCCGGTCTGGTTCACCGAATACGGTTGCCCGGCCGTCCATCTT 15750 ||| |||| || |||||| ||||||||||||| ||| || |||||| || | | Sbjct 20691 TGGGTGCCGGAGTCGAAGCCGATCTGGTTCACCGAGCTCGGCTGTCCGGCCATCGACCGG 20750 Query 15751 GGACCAAATCAGCCGAACGTGTTCTTTGACGCGCTTTCGTCGGAGGCCGCCTTGCCGCAT 15810 || | || ||||| ||||||||||| ||| || ||||||||| | | ||||||| Sbjct 20751 GGCACCAACCAGCCCAACGTGTTCTTCGACCCGAAGTCGTCGGAGAGCTTCACGCCGCAT 20810 Query 15811 T 15811 | Sbjct 20811 T 20811 Score = 82.4 bits (90), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 10542 TTCCAAGGGGCCTATGATGCAATCAAGGCCGTCTGGGGTATGTTGCCCGCCGCCCTTGGC 10601 ||| | || ||||| || || |||||||| |||||||| || ||||||||||| | ||| Sbjct 13746 TTCGAGGGCGCCTACGAGGCGATCAAGGCGATCTGGGGTCTGCTGCCCGCCGCCATCGGC 13805 Query 10602 GATCT---GATCTATGCCTCCGCGAATTCGGTTATCGGCGGGGTCGAGGCGATGATTAAC 10658 ||||| | || | | | ||||| | ||| ||| |||||||||||| | ||| Sbjct 13806 GATCTCGCGTTCCAGG---CAGCGAACAGCCTCGTCGACGGTGTCGAGGCGATGCTGAAC 13862 Query 10659 GGGGTTGTGACCCGGATCAACGCTTTCATC 10688 || || || | || ||||||| |||||| Sbjct 13863 GGCGTGGTCTCGCGCATCAACGGCTTCATC 13892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114979078305468