Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq31122 170 6e-38 >seq31122 Length=1901 Score = 170 bits (188), Expect = 6e-38 Identities = 226/312 (72%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 39442 GATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACG 39501 |||||| | |||||||||| |||||| ||||| ||| ||| ||||||| || | || Sbjct 131 GATCTGGCCCACCTTGTCGCGGCCGTATTTCTCCTGGACATACTGGATCACCTCCTCGCG 190 Query 39502 GCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGG 39559 |||| ||| |||||||||||| | ||| ||||| || || ||||| ||||||||| Sbjct 191 GCGATC--CATGCAGAAGTCGATGTCGAAGTCCGGCATCGACACCCGCTCCGGGTTCAGG 248 Query 39560 AACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTAC 39619 || || ||||| | || | || | | |||||| ||||||||||| || || || Sbjct 249 AAGCGTTCGAACAGCAGGCTGTAGCGCAAGGGGTCGAGGTCGGTGATGGTCAGCGCATAG 308 Query 39620 GCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTC 39679 || ||||||| || || | ||||| ||||| || |||||| | |||| ||||| Sbjct 309 GCCACCAGCGAACCCGCGCCCGAGCCCCGCCCCGGTCCGACCGGGATGCCGTGGTCCTTG 368 Query 39680 GCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATC 39739 ||||| |||||| ||||| |||| ||||| || || || |||||||| | ||| Sbjct 369 GCCCATTTGATGAAATCGGCCACGATCAGGAAATATCCGGGAAAGCCCATCTGCTCGATG 428 Query 39740 ATGTCGATCTCG 39751 ||| | | |||| Sbjct 429 ATGCCCAGCTCG 440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159812844426300