Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq179470 105 1e-18 >seq179470 Length=35510 Score = 105 bits (116), Expect = 1e-18 Identities = 208/302 (69%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 27556 CCGCC--ATGACTGCCTATTACAACGAAATCGATCCCTTCGCC-GCGCAATGGCTGCGCA 27612 ||||| ||| | | |||||||||||| ||| ||| ||| | || |||||||| Sbjct 881 CCGCCTGATGGCCGTCTATTACAACGATTCCGACCCCGCGGCCTGTGCC-TGGCTGCGGG 823 Query 27613 ACCTGATCGACGCTGGGCACATCGCCCCGGGCGTCGTTGACACTCGCTCAATTGAGGAAG 27672 |||| |||| ||| || ||| | | | |||| || ||| || || ||| || | Sbjct 822 ACCTCATCGCCGCCGGCCACCTTCCGGCTGGCGAGGTGGACGAACGATCCATTCTCGACG 763 Query 27673 T--AACCGCAAATGACCTTAAAGGATTCACGCAATGCCACTTCTTTGCCGGGATCGGTGT 27730 | | ||| ||||| || ||| ||||||| || ||||| ||||||||||| | Sbjct 762 TGGAGCCGTCC--GACCTGCGCGGCTTCGCGCAATGTCATTTCTTCGCCGGGATCGGCGG 705 Query 27731 GTGGTCTTACGCCCTGCGCCGCGCAGGATGGCCCGATGATCGCCCCGTCTGGACAGGTTC 27790 ||| | ||||| ||||||| ||| || | |||| || || || |||||||| || || Sbjct 704 TTGGCCCTACGCACTGCGCCTCGCTGGCGTGGCCGAGGACCGGCCGGTCTGGACCGGATC 645 Query 27791 ATGCCCCTGCCAGCCTTTCAGCGCCTGCGGAAAGCGACAGGGATTTGACGATCCCCGCCA 27850 ||||||||||| |||||| ||| || || ||||| |||||| |||||| Sbjct 644 GCCGCCCTGCCAGCCCTTCAGCCAGGCCGGGAAACGCAAGGGACAGGACGATGACCGCCA 585 Query 27851 TC 27852 || Sbjct 584 TC 583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106821681793164