Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq188777 111 5e-20 seq194362 86.0 2e-12 seq186304 86.0 2e-12 seq180639 86.0 2e-12 seq180638 86.0 2e-12 >seq188777 Length=20276 Score = 111 bits (122), Expect = 5e-20 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 18123 CGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTCGAT 18182 || || || ||| || |||||||||| || ||||| | |||||| || || || Sbjct 9409 CGCGTGAACGAGGTCAGCGAGATCACCCAGGGGCTGAAGGCCGTCGCCAAGGAACTGGAC 9350 Query 18183 ATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAGCA--GTCGAGAGCAGAGAGGATAAGC 18240 || ||||| | |||||||||||| ||| || ||||| ||| | ||||| |||| Sbjct 9349 ATTCCCGTCATCGCGCTGTCGCAGCTG--TCGCGCCAGGTCGAAAGCCGCGAGGACAAGC 9292 Query 18241 GACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCG 18300 | || | || || ||||| ||||| ||||| |||||||||||||||||||| | Sbjct 9291 GCCCGCAACTGTCGGACCTGCGCGAATCCGGCAGTATCGAGCAGGACGCCGACATCGTGA 9232 Query 18301 CGTTCTTGTTCCGTGAGGCCTACTACCTCGAACGCGA 18337 |||| | ||||| |||| || |||| ||| ||||| Sbjct 9231 TGTTCGTCTTCCGCGAGGAATATTACCGCGAGCGCGA 9195 >seq194362 Length=24653 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 24430 CGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 24489 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 24490 CTGCCCCCGCAACCA 24504 >seq186304 Length=18897 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 18674 CGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 18733 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 18734 CTGCCCCCGCAACCA 18748 >seq180639 Length=8005 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 5748 CGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 5807 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 5808 CTGCCCCCGCAACCA 5822 >seq180638 Length=39462 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 224 CGGGGTAGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 165 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 164 CTGCCCCCGCAACCA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162091553780676