Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_029047.1 Length=32894 Score E Sequences producing significant alignments: (Bits) Value seq189007 131 4e-26 >seq189007 Length=16589 Score = 131 bits (144), Expect = 4e-26 Identities = 215/310 (69%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 708 CCGGACGCATAGCGCGGAGCAGGTCGCGCAGATCGCTGCAAGCATTAAAGAGTTCGGATT 767 |||||| || |||| ||| ||| |||| |||||||| || || |||||||| || Sbjct 872 CCGGACCCACAGCGAGGATCAGATCGCCCAGATCGCGGCCTCGATCGCCGAGTTCGGCTT 931 Query 768 CAACAACCCAGTGCTGATCGACGCCGACAATGGAATCATCGCCGGGCATGGCCGATTGCT 827 || ||| || | ||||||| || ||| | | |||||||| || || ||||| || | Sbjct 932 CACCAATCCGATCCTGATCGGCGAGGACGAGGTGATCATCGCGGGTCACGGCCGTCTGAT 991 Query 828 GGCAGCGCAGAAGCTTGGCATGGATGAGGTGCCGACCATCTGCCTCGACCATCTGAACGA 887 ||| || | ||| ||| || | |||||| ||| || ||||| |||| ||| Sbjct 992 GGCCGCCAAAGCGCTGGGCCTGACCCAAGTGCCGGTGATCGTGCTGGACCACCTGACCGA 1051 Query 888 CGCACAGCGCCGGGCTTACGTGATCGCCGACAACAAGCTCGCGTTGAACGCCGGATGGGA 947 || ||||||||||| ||||||||||||||| |||| ||| ||||| ||||| Sbjct 1052 AGCCCAGCGCCGGGCGCTGGTGATCGCCGACAACCGCATCGCCGAGAATGCCGGGTGGGA 1111 Query 948 CGACGAAGCATTGCAGGCCGAACTCGACCGACTGCGAGATGAGGACTTCGATTTGGATTT 1007 |||||| ||| | | ||||| | ||||| || | ||| |||||| |||| | Sbjct 1112 CGACGACCTGCTGCGGTCGGAACTGGCGGCGCTGCGCGAGGCGGATTTCGATCTGGACCT 1171 Query 1008 GCTTGGGTTC 1017 | | || ||| Sbjct 1172 GATCGGCTTC 1181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104858927937504