Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq196771 82.4 7e-11 >seq196771 Length=22834 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 34630 GCTGTC-CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA 34688 |||||| |||| |||| || || || |||| |||||| | |||||||||||||||| Sbjct 20061 GCTGTCGCTGC-AGCTTTACCAGCGCTCGGCCGACATGTTCCTGGGGGTGCCGTTCAACA 20119 Query 34689 TTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGG 34748 | || || || ||||| ||| | ||| | || ||||| ||| | | | || | Sbjct 20120 TCGCCTCCTATGCGCTGCTGACGCATATGCTGGCCCATGTGACGGGATACGAGGCGGGCG 20179 Query 34749 AGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGA 34808 | | | || || |||| |||||||||||||||||||||||| | || | | | | || Sbjct 20180 ACTTCATCCACACCATGGGCGATGCGCATATCTACCTGAACCACCTGGACCAGGTGCAGA 20239 Query 34809 TCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 || ||| || |||| || || | |||| ||| Sbjct 20240 CGCAACTGGCGCGCCAGCCGCGCCCCCTGCCCCGGCT 20276 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 ||| |||| | || || |||| || ||| || || | | | | || | ||||||| Sbjct 20276 AGCCGGGGCAGGGGGCGCGGCTGGCGCGCCAGTTGCGTCTGCACCTGGTCCAGGTGGTTC 20217 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 ||||||||||||||||| |||| || || | | || || | | | ||| ||| Sbjct 20216 AGGTAGATATGCGCATCGCCCATGGTGTGGATGAAGTCGCCCGCCTCGTATCCCGTCACA 20157 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || | ||| | ||| ||||| || || || ||||||||||||||||| | | Sbjct 20156 TGGGCCAGCATATGCGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACCCCCAGGAAC 20097 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAG-GACAGC 6715 ||||| |||| || || || |||| |||| |||||| Sbjct 20096 ATGTCGGCCGAGCGCTGGTAAAGCT-GCAGCGACAGC 20061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447004564499040