Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq196771 125 6e-24 >seq196771 Length=22834 Score = 125 bits (138), Expect = 6e-24 Identities = 223/320 (70%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTC- 29712 |||| ||||| ||||||| || ||||| |||| |||||||| || || |||| || Sbjct 20228 TCCAGGTGGTTCAGGTAGATATGCGCATCGCCCATGGTGTGGATGAAGTCGCCCGCCTCG 20169 Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 || |||| | || || |||| ||| | ||| || || | ||| ||||||||| || || Sbjct 20168 TATCCCG-TCACATGGGCCAGCATATGCGTCAGCAGCGCATAGGAGGCGATGTTGAACGG 20110 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 |||||| || |||||| | || | |||||| ||||| ||| ||| ||||| Sbjct 20109 CACCCCCAGGAACATGTCGGCCGAGCGCTGGTAAAGCTGCAGCGACAGCCGGCCGTCCTG 20050 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGG 29892 ||| | ||| |||| | |||||| || || ||||||||| | ||| ||| ||| Sbjct 20049 CACCCGCACCTGCCACAGCGTATGGCAGGGCGGCAGGGCCATGCGGTCCACCTCTCCGGG 19990 Query 29893 GTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 29952 ||||||||| | ||||| | || | || || | || | |||| ||||||| Sbjct 19989 GTTCCAGGCCGAGACGATCAGCCGGCGTGAATCGGGCGTCTTGCGGATGCGGTCCAC-CA 19931 Query 29953 GTTTTGC-AGCTGATCCACC 29971 ||| || | |||||||||| Sbjct 19930 GTTCGGCGATCTGATCCACC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405051988509052