Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq196771 111 1e-19 seq219361 82.4 6e-11 seq184032 82.4 6e-11 seq184031 82.4 6e-11 >seq196771 Length=22834 Score = 111 bits (122), Expect = 1e-19 Identities = 252/374 (67%), Gaps = 4/374 (1%) Strand=Plus/Minus Query 27094 ATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACG 27153 |||| ||| ||| | ||| | |||| | | | || || |||| || | | |||| | Sbjct 20282 ATCCGCAGCCGGGGCAGGGGGCGCGGCTGGCGCGCCAGTTGCGTCTGCACCTGGTCCAGG 20223 Query 27154 TGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTC-TAGCCC 27212 || | |||||||| || || || |||| |||||||| || || |||| || || ||| Sbjct 20222 TGGTTCAGGTAGATATGCGCATCGCCCATGGTGTGGATGAAGTCGCCCGCCTCGTATCCC 20163 Query 27213 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 27272 | | || || |||| ||| | ||| || || | ||| ||||||||| || || ||||| Sbjct 20162 G-TCACATGGGCCAGCATATGCGTCAGCAGCGCATAGGAGGCGATGTTGAACGGCACCCC 20104 Query 27273 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTA 27332 || |||||| |||| | |||||| ||||| ||| ||| || || || Sbjct 20103 CAGGAACATGTCGGCCGAGCGCTGGTAAAGCTGCAGCGACAGCCGGCCGTCCTGCACCCG 20044 Query 27333 AAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 | ||| || | | ||||| || || || |||||| || ||| ||| ||||||||| Sbjct 20043 CACCTGCCACAGCGTATGGCAGGGCGGCAGGGCCATGCGGTCCACCTCTCCGGGGTTCCA 19984 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 27452 ||| | ||||| | || | || || | || | |||| ||||||| ||| | Sbjct 19983 GGCCGAGACGATCAGCCGGCGTGAATCGGGCGTCTTGCGGATGCGGTCCAC-CAGTTCGG 19925 Query 27453 C-AGCTGATCCACC 27465 | | |||||||||| Sbjct 19924 CGATCTGATCCACC 19911 >seq219361 Length=4201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 819 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 877 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 878 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 935 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 936 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 967 >seq184032 Length=1086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 233 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 175 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 174 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 117 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 116 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 85 >seq184031 Length=1083 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368496274720142