Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq208634 758 0.0 seq188777 100 9e-17 seq199262 86.0 2e-12 >seq208634 Length=57299 Score = 758 bits (840), Expect = 0.0 Identities = 1161/1647 (70%), Gaps = 56/1647 (3%) Strand=Plus/Plus Query 929 GAGAAGCGCGAGAGCCTTCCTGCCAGGATCGCCAAACTGATGGAGATCCGGGCCGAGGCT 988 || |||||||| ||||| || ||| || ||| || |||||| ||||||| ||||| | Sbjct 42087 GAAAAGCGCGAAAGCCTGCCCGCCCGGGTCGAGAAGCTGATGCAGATCCGCGCCGAAGGC 42146 Query 989 CCAGATGCTCACCGGATCATCTGGCATGACCTCGAGGCGGAACGCCACGCGATCGAGGCC 1048 || || || ||||||||||||||||| ||||||||||| || ||| ||| | || Sbjct 42147 CCGGACGCGCACCGGATCATCTGGCACGACCTCGAGGCCGAGCGCGCGGCGCTGGAAAAG 42206 Query 1049 GCTATCCCCGACGCCGTCAGCGTCTACGGCGCCCAGGATCTGGAAGAGCGCGA-ACGCGC 1107 || ||||| | || | ||||||||| | || || || || | |||||| |||| Sbjct 42207 GCGATCCCGACCATCGCGACGGTCTACGGCTCGCAAGACCTTGACGCGCGCGAGACGCT- 42265 Query 1108 GATTGTCCAGTTCAGCGACGGCGAGTTCCAGGAACTGGCTGCCAAGCCGGTGATCGCAGG 1167 ||| | | ||| |||||| | |||||||||||| |||||||| ||||| || Sbjct 42266 GATCGGGGATTTCGCCGACGGGCTGGTCCAGGAACTGGGCGCCAAGCCCGTGATGCTGGG 42325 Query 1168 CAGCGGCTGCAACTTCCAGCGCCACTGCTCGTGGGCCATCTACCTGGGCATCGGCTTCAA 1227 |||| |||| | ||||| || ||| | ||| || | | |||||||||||||||||| Sbjct 42326 GTCCGGCACCAACCTGCAGCGGCATTGCGCCTGGTCCGTGTTCCTGGGCATCGGCTTCAA 42385 Query 1228 GTTCAACGACTTCATCCAGTCCATTCACCGCCTGCACCGATTCCTGCAGA---CCGGCCG 1284 ||||||||||||||||||| | | || || |||| || ||| ||||| ||| | | Sbjct 42386 GTTCAACGACTTCATCCAGGCGGTCCATCGGCTGCGGCGCTTCGGGCAGATCGCCGACAG 42445 Query 1285 CGTGCGCATCGACCTGATCTATACCGAGGCCGAGCGCGACATCCGCCGCCAACTCGAACG 1344 |||||| ||||| ||||||| ||||||||||||||||| |||||||| || ||||| Sbjct 42446 CGTGCGGCTCGACATGATCTACACCGAGGCCGAGCGCGAGGTCCGCCGCTCGCTAGAACG 42505 Query 1345 GAAGTGGCAGCAGCACAACACCATGGTTCAGCGCATGACCGAGATCATCAAGCAGTACGG 1404 || |||| ||||||||| ||||||||| |||| ||| ||| ||||| | ||||| Sbjct 42506 CAAATGGCGCCAGCACAACGAGATGGTTCAGAAGATGATCGACATCGTCAAGGAATACGG 42565 Query 1405 CCTGTCCGTGGCCGCCATGGCACAGACCCTCACCCGCTCCATGGGCGTGGAGCGCGTCGA 1464 ||| || | |||||| ||| | || |||| || ||||||| ||||| ||||| Sbjct 42566 CCTCAGCGAGATTGCCATGCAGCAGGCGCTGGTCCGCGCCTTGGGCGTCGAGCGGGTCGA 42625 Query 1465 GATCAAGGGCAAGGACTACACCATCGTCAACAACGACACCGTGCTCGAAACCCGCCGCAT 1524 | | |||| |||||| | |||| |||||||| |||| ||| |||||| ||| Sbjct 42626 GGCCTCGGGCCCGGACTATCGCTGCGTCCACAACGACTGCGTGGCCGAGACCCGCTCCAT 42685 Query 1525 GGA--AAGCAACAGCGTCGGCTTGACCATCACCAGCATCCCCTTCAGCACCCAGTACGAG 1582 || | || | | | | ||| || | ||||| ||||| ||||||||||||||||| Sbjct 42686 GGCCGATGCCTCGGTG-CAGCT-GATCGTCACCTCGATCCCGTTCAGCACCCAGTACGAA 42743 Query 1583 TACTCGCCGAACTACGCCGACTTCGGCCACACCGACGACAACGCGCACTTCTTCGAGCAG 1642 ||| |||||||| |||||||||||||||||||||||| ||| ||| |||| ||||| Sbjct 42744 TACAGCCCGAACTATGCCGACTTCGGCCACACCGACGACGACGGGCATTTCTGGCAGCAG 42803 Query 1643 ATGGACTATCTGATCCCGGAACTGCTGCGCGTGACCATCCCCGGGCGTCTGGCCTGCATC 1702 |||| || |||| |||| |||||||||||||| || || || | || ||| Sbjct 42804 ATGGGCTTTCTGGTCCCCGAACTGCTGCGCGTTCTGGAGCCGGGCCGGATCGCGGCGATC 42863 Query 1703 CACGTGAAGGATCGCATCATTCCCGGCGGAATGACCGGCCTTGGCTTCCAGACCGTCTAC 1762 ||||| ||||| || ||||| || ||||| || | ||| | || || |||||| ||| Sbjct 42864 CACGTCAAGGACCGGATCATCCCGGGCGGCATCAACGGGTTCGGGTTTCAGACCCTCTCG 42923 Query 1763 CCCTTCCACATGGAA---GTGACTCGAGCCTTCGTCAAGCATGGCTGGGCCTATATGGGC 1819 | | |||||||| ||| | |||| ||| ||||||| |||||| | ||| Sbjct 42924 ACGCTGCACATGGATTGCGTG-CGCGAG--TTCCAGCGCCATGGCTTTGCCTATCTCGGC 42980 Query 1820 ATGAAGACCATCGTCACCGACGTGGTTCGCGAGAACGCCCAGACCTACCGCCTTTCGTGG 1879 |||||||||||| ||| |||||||| ||||||||| ||||||||| ||||| ||| Sbjct 42981 ATGAAGACCATCACCACGGACGTGGTGCGCGAGAACAACCAGACCTATCGCCTGGGCTGG 43040 Query 1880 ACGGAGCAGTGCAAGGACGGCACCAAGATGGG-TGTCGGCATGCCCGAGTACTTGCTGAT 1938 || ||||| |||||||||||| | ||||| ||| ||| |||| || ||| ||||||| Sbjct 43041 ACCGAGCAATGCAAGGACGGCTCGCGCATGGGCTGT-GGCGTGCCGGAATACCTGCTGAT 43099 Query 1939 CTTCCGCAAGCCGCCCACCGACAACTCCAACGCCTACGGCGACGTGCCGGTGGTCAAGGC 1998 ||||||| ||||| ||||| | ||||| ||| | |||| |||||||| |||| Sbjct 43100 CTTCCGCCGCCCGCCGACCGATCGCAGCAACGGCTATGCCGACCGGCCGGTGGCCAAG-- 43157 Query 1999 AAAGCCTCTGTGCATCGACGAAGACGGCCAAATCGTCCCCTTCGCCATGGACAAGAAGCT 2058 ||| |||| || || | |||| |||| |||| | Sbjct 43158 ---GCC--------------AAGATGG--AATGGGACCCCGAGGCCAAGGACTGG----- 43193 Query 2059 CACCGTCACCCGCGGCAACGGCTACAGCCGGGCACGCTGGCAGTTGGACGCCCACGGCTN 2118 || || | | |||||||||||| || ||||||||| | || || ||||||| Sbjct 43194 ---CGCAACGAGGG----CGGCTACAGCCGCGCCCGCTGGCAGGTCGATGCGCACGGCTA 43246 Query 2119 NNNNNNNNNNNNNNNNNNNCGTCCGCTGACTGAAGCGGACTTCGAAGGCATTCCGCACG- 2177 || | ||| ||| | | | | ||| | | | || Sbjct 43247 CATGCGGTCGAACGGCGACCGGACCCTG-CTGCCGGGCGATCTGGAGGGACTGGACGCGG 43305 Query 2178 ACGTGATGTTCAAG--CTGTACCGCGACTACAGCCTGTCCACCGTCTACGACTTCGAGCA 2235 | | | | |||| ||| | ||| ||| |||||| |||||||||| |||||||| Sbjct 43306 ATCAGGTCTACAAGGTCTGGAAGGCGC--ACAACCTGTCTGCCGTCTACGATTTCGAGCA 43363 Query 2236 CCACGTCCGCATCGGCGAATCGCTGGAGGTCACCGGGAAGCTGCCCACCGGCTTCATGCT 2295 ||||| || |||| |||| || ||| | | || | |||| || ||||||||| Sbjct 43364 TCACGTTCGGATCGCCGAAGACCTCGAGATGAAGGGCCGGTTGCCGCCCACCTTCATGCT 43423 Query 2296 GCTTCCACCGCAGTCCTGGCACCCGGACGTATGGACCGACGTCGCCCGCATGCGGACGCT 2355 ||| || ||||| | ||| || || || |||||||| ||||| ||||||||||| | Sbjct 43424 GCTGCCGCCGCACAGCCTGCATCCCGATGTCTGGACCGATGTCGCGCGCATGCGGACCAT 43483 Query 2356 CAACGCCCAGCAGTACAGCAAGGGCCAGGAAATGCACCTGTGCCCGCTGCAGTTCGACAT 2415 ||| ||| | ||| ||||||| |||||||||||||||||||||||||| | |||||| Sbjct 43484 CAATGCCGAACAGGCGCGCAAGGGTCAGGAAATGCACCTGTGCCCGCTGCAATACGACAT 43543 Query 2416 CGTCGACCGGGCCATCGTGCAGTACTCCATGGAAGGAGACCTGGTCTTCGATCCCTTCGG 2475 ||| ||||| |||||||| |||||| || | || || ||||| || |||||||| Sbjct 43544 CGTGGACCGCGCCATCGTCCAGTACACCGAGCCGGGCGAATGGGTCTATGACCCCTTCGG 43603 Query 2476 CGGGATCATGACCGTCCCGTACTGCGCGCTGAAGCTCAAGCGCAGAGCCCGCGCCCACGA 2535 |||| | |||||||| || | | ||||| | ||||| ||||| || | || ||| Sbjct 43604 CGGGCTGATGACCGTGCCCTTCCGCGCGGTCAAGCTGCGGCGCATAGGCATCGGGGTCGA 43663 Query 2536 ACTGAACTCCCGCTACTTCCTGGACGG 2562 ||||||| |||||| || ||||| Sbjct 43664 ACTGAACAAGGGCTACTGGCTCGACGG 43690 Score = 284 bits (314), Expect = 4e-72 Identities = 304/397 (77%), Gaps = 15/397 (4%) Strand=Plus/Plus Query 376 CATCTACCTGACCAATTACGAGACCGTCCGCGACGGCAAGCT--CGACCCTCGCCGGTTC 433 ||||||||||||||||||||||| ||| ||||| |||||| | || || || ||| Sbjct 40922 CATCTACCTGACCAATTACGAGAGCGTGCGCGAGGGCAAGGTTTCGCCCGATCCC--TTC 40979 Query 434 AGCGTGGCAAGCCTGGACGAAGCCAGTTGCCTTCGCGGCTTCGGCGGCAGCAAGACGTTC 493 || | ||||| ||||| ||| ||| |||||||||||||||| |||||| ||| Sbjct 40980 GTCGGCGTCAGCCTCGACGAGGCCGCGATCCTGCGCGGCTTCGGCGGCACCAAGACCTTC 41039 Query 494 CGCGAGTTCATGGCTCTGTTCGCTGGTGACGATCG-CGC-------CG--CCGGCATCCG 543 |||||||||||||| ||||| || || ||||| || ||| || |||| ||| Sbjct 41040 CGCGAGTTCATGGCCCTGTTTGCCGGCGACGACCGGCGCGACCAGTCGAACCGG-ATCAA 41098 Query 544 CGGCGATGGCGTCCGGTACCGGTACGTGGCCACTGCCACGCCAAGCCCGAACGAATACAT 603 ||| ||||||| || || | || ||||| |||||||||||||||||||| ||||| Sbjct 41099 GACCGAGGGCGTCCCCTATCGCTTTGTCGCCACGGCCACGCCAAGCCCGAACGACTACAT 41158 Query 604 CGAGCTACTGGCTTACTCGGCCTTCCTCGGCGTGATGGATGTCGGCCAGGCCAAGACCAG 663 |||||| ||| | || | | |||||||| |||||||||| ||||||||||||||||| | Sbjct 41159 CGAGCTGCTGTCCTATGCCGGCTTCCTCGACGTGATGGATATCGGCCAGGCCAAGACCCG 41218 Query 664 GTTCTTCAAACGCAACTCTGAGAAGGCCGACCAACTCACCATCCATGCCCACAAAGAGGG 723 |||||| || |||||| |||||||||||| |||||||| | ||| |||| |||||| | Sbjct 41219 GTTCTTTAAGCGCAACAGCGAGAAGGCCGACAAACTCACCTTGCATCCCCATAAAGAGCG 41278 Query 724 CGAGTTCTGGATGTGGGTGGCGTCCTGGGCGATCTTC 760 || || ||| | ||||| || ||||| ||||| Sbjct 41279 GGAATTTTGGGTCTGGGTAGCCAGTTGGGCTCTCTTC 41315 >seq188777 Length=20276 Score = 100 bits (110), Expect = 9e-17 Identities = 191/274 (70%), Gaps = 7/274 (3%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 || || ||| | |||||||| | | |||||||||||||||||| ||||| |||||| Sbjct 9213 TCCTCGCGGAAGACGAACATCACGATGTCGGCGTCCTGCTCGATACTGCCGGATTCGCGC 9272 Query 34114 AGGTCCGACATCATCGGTCGCTTGTTC-GGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 |||||||||| ||| ||||||| | || ||| || | ||| |||||||| Sbjct 9273 AGGTCCGACAGTTGCGGGCGCTTGTCCTCGCGGCT-TTCGACCTGGCGCGACAGCTGCGA 9331 Query 34173 CAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGGGACATGTC 34232 |||| |||| ||||| || | || ||| |||| | ||| | ||| || || Sbjct 9332 CAGCGCGATGACGGGAATGTCCAGTTCCTTGGCGACGGCCTTCAGCCCCTGGGTGATCTC 9391 Query 34233 GCTGACGTCCTCGGTGCGAGTTGACTT-GCCG--GAGCTCTCCAGCAACTGCAGGTAGTC 34289 |||||| || | ||| | ||| |||| | | || ||||| |||||| ||||| Sbjct 9392 GCTGACCTCGTTCACGCGGCTGTCCTTGGCCGATGCGGCCTTCAGCAGCTGCAGATAGTC 9451 Query 34290 CACCACCAGCAGGCTCA-ACCCATGGCGCTGCTT 34322 ||| | ||||||| || |||||||| || |||| Sbjct 9452 CACGATCAGCAGGTCCAGACCCATGGTGC-GCTT 9484 >seq199262 Length=27203 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4526 TCGACATCCGATTGCGGATGCTGAAACCGCGTGAGTTGTACCGCGCCCAGGGCTTCCCCG 4585 |||||||| | |||||||||||| ||||| || |||| |||||||||||||||||||| Sbjct 737 TCGACATCGGCATGCGGATGCTGACCCCGCGCGAATTGTTCCGCGCCCAGGGCTTCCCCG 796 Query 4586 ACAGCTACATCATCGAG 4602 || ||| |||||||| Sbjct 797 ACGACTATGTCATCGAG 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160036247304180