Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq55252 553 9e-153 >seq55252 Length=1842 Score = 553 bits (612), Expect = 9e-153 Identities = 697/951 (73%), Gaps = 20/951 (2%) Strand=Plus/Minus Query 78220 GGCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCAC 78279 ||| |||||||||||| | | |||||| ||| || ||| | || || || Sbjct 1763 GGCGATCAACTGGAACCGGCTTGAGGACGAGAAGGACCTGGAGGTCTGGAACCGCCTGAC 1704 Query 78280 CGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACAC 78339 | ||||||||| ||||||| ||||| ||| |||| || ||| | | | ||||| ||| Sbjct 1703 GGTGAACTTCTGGCTGCCCGAAAAGGTGCCGCTGTCGAATGACGTGCAAAGCTGGGCCAC 1644 Query 78340 CCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGA 78399 || |||| ||| || || || || || || || ||||| || || ||||| || Sbjct 1643 GCTGCGCCCGGCCGAGCAGACGCTGACCATCCGCGTCTTTACCGGGCTGACGCTGCTTGA 1584 Query 78400 CACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGA 78459 ||| |||||| ||| |||||||| |||| | || |||||||| ||||||||||| Sbjct 1583 CACGATCCAGAACACCGTTGGCGCGCCCTCGATGATGCCCGACGCCGTGACCCCGCACGA 1524 Query 78460 GGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTC 78519 ||||||||||| | |||||||| ||||||||| |||| ||||| ||| || Sbjct 1523 AGAGGCGGTGCTTTCGAACATCGCCTTCATGGAGGCGGTGCACGCGCGCAGCTATTCGTC 1464 Query 78520 GATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGA 78579 |||||| || ||||| ||| | ||||| | || |||||||| ||||| ||| | ||||| Sbjct 1463 GATCTTTTCGACGCTGTGCAGCACCAAGGAAATCGACGAGGCCTTCCGCTGGGCCGAGGA 1404 Query 78580 GAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCG---CGGCGACGA 78636 |||| | | ||||| |||||| | | | || || || | ||| ||||| ||| Sbjct 1403 GAACCCGCATCTGCAAGCCAAGGCGCGGCTGGTGCTTGAGAAATACAAGGCCGGCGCCGA 1344 Query 78637 CCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTT 78696 || ||||||| ||| | ||| | ||||||| ||||| | ||||| |||||||| Sbjct 1343 TCCGCTGAAGCGCAAGATCGCCTCGGTGTTCCTGGAAAGCTTCATGTTCTATTCGGGCTT 1284 Query 78697 CTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCG 78756 ||| ||||| |||||||||||||||||||| |||||||| |||||||| ||| ||||||| Sbjct 1283 CTATCTGCCCATGTACTGGTCGAGCCGCGCGAAGCTGACCAACACCGCCGACCTGATCCG 1224 Query 78757 GTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGG 78816 |||| ||||| ||||| || || ||||| || |||||||| ||||| |||||||| || Sbjct 1223 TCTGATCATCCGCGACGAGGCGGTGCATGGCTATTACATCGGCTACAAATACCAGCGCGG 1164 Query 78817 CCTCGAGACCCAGG----GGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATC 78872 || ||| | | || |||| | ||| |||| | |||||||| | | | || | | Sbjct 1163 GCTTGAGGCTCTGGACGAGGCCCG-GCGCCAGG---AACTCAAGGACTTCGCCTTTGCGC 1108 Query 78873 TGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCG 78932 || | | || || ||||||| |||| | ||||||| |||| || |||| | ||| Sbjct 1107 TGATGTTCGATCTTTACGACATCGAGGCGAAATACACCGCCGAGCTTTACGACGGCATCG 1048 Query 78933 GACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACC 78992 | || |||||||| |||||| ||||||| |||||||| ||||||||| ||| ||||| Sbjct 1047 GCCTGACCGAGGACGTCAAGGCCTTCCTGCACTACAACGCCAACAAGGCCCTGCAGAACC 988 Query 78993 TCGGCTACGAAGCACTGTTCCC---CAAGGAAGAGACCATGGCAGACCCGGCCATCATGT 79049 | |||||||| || |||||||| | ||| | | | || | ||||| ||| || Sbjct 987 TGGGCTACGAGGCGCTGTTCCCGCCCCAGGCCTG--CGAGGTCA-ATCCGGCGATCCTGG 931 Query 79050 CCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCT 79109 ||||||| || || | | |||| ||||||||||||||||| |||||||| ||||||| Sbjct 930 CCGCGCTTTCGCCCGACAGCGAA---AACCACGACTTCTTCTCGGGGTCGGGGTCGAGCT 874 Query 79110 ACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGAT 79160 | ||||||||||| || | || || | |||||||| ||||||||||||| Sbjct 873 ATGTCATCGGCAAGGCGGTCGCGACCGAGGATGAGGATTGGGACTTCTGAT 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 298502693704676