Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq198488 226 8e-55 seq183536 226 8e-55 seq197527 224 3e-54 seq178390 100 8e-17 >seq198488 Length=23545 Score = 226 bits (250), Expect = 8e-55 Identities = 185/225 (82%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 25796 CGACGTGGTGGTGAACATCAACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTA 25855 ||| ||||||||||||||||||||||| ||||| || || ||||||||||| || ||||| Sbjct 3716 CGAGGTGGTGGTGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTA 3775 Query 25856 CAACCTGCTGCGCGAGCACAAGGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTC 25915 |||| ||||||||| |||||||||| | ||||| || ||| | |||| || || || || Sbjct 3776 CAACATGCTGCGCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTC 3835 Query 25916 CGCAGCGTCGTTCATTGCCATGGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCT 25975 || || ||| ||||||||||||||| ||| | | ||||||||||||| ||||| || Sbjct 3836 GGCCGCCTCGGTCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCGCGCGGGCTTTCT 3895 Query 25976 GATGATCCACAACGCCTGGACGATCGCCGCGGGTGACCGCAACGA 26020 ||||||||||||| ||||| || |||| |||||||||||||| Sbjct 3896 GATGATCCACAACACCTGGGTCATGGCCGTCGGTGACCGCAACGA 3940 >seq183536 Length=15448 Score = 226 bits (250), Expect = 8e-55 Identities = 185/225 (82%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 25796 CGACGTGGTGGTGAACATCAACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTA 25855 ||| ||||||||||||||||||||||| ||||| || || ||||||||||| || ||||| Sbjct 11733 CGAGGTGGTGGTGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTA 11674 Query 25856 CAACCTGCTGCGCGAGCACAAGGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTC 25915 |||| ||||||||| |||||||||| | ||||| || ||| | |||| || || || || Sbjct 11673 CAACATGCTGCGCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTC 11614 Query 25916 CGCAGCGTCGTTCATTGCCATGGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCT 25975 || || ||| ||||||||||||||| ||| | | ||||||||||||| ||||| || Sbjct 11613 GGCCGCCTCGGTCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCGCGCGGGCTTTCT 11554 Query 25976 GATGATCCACAACGCCTGGACGATCGCCGCGGGTGACCGCAACGA 26020 ||||||||||||| ||||| || |||| |||||||||||||| Sbjct 11553 GATGATCCACAACACCTGGGTCATGGCCGTCGGTGACCGCAACGA 11509 >seq197527 Length=40067 Score = 224 bits (248), Expect = 3e-54 Identities = 245/324 (76%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 25700 CATCAGCATCTTCGACCCGATCGGGTACGACTGGTGGACTGGCGAGGGCGTCACGGCCAA 25759 ||||||||| ||||| |||||| ||| | ||||||||||| ||||| || ||||| Sbjct 26166 CATCAGCATGCTCGACGTGATCGGTGCGGACGGATGGACTGGCGACGGCGTGACAGCCAA 26107 Query 25760 GCGCATCAGCGCCGCGTTGCGAGCCATGAAGGATGCCGACGTGGT---GGTGAACATCAA 25816 |||||| ||| || |||| | || | | |||||| | | ||| || |||| Sbjct 26106 CCGCATCGCCGCGGCCCTGCGGTCGATCACCG---CCGACGAGATCACGGTCGACCTCAA 26050 Query 25817 CAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTACAACCTGCTGCGCGAGCACAA 25876 |||||| ||||| || |||||||||| |||||||||||||||||||||||||| || Sbjct 26049 CAGCCCCGGCGGCGACTTCTTCGAGGGCGTGGCGATCTACAACCTGCTGCGCGAGGACCC 25990 Query 25877 GGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTCCGCAGCGTCGTTCATTGCCAT 25936 |||||||||| || ||| | ||||| || || || ||||| || ||| | || ||||| Sbjct 25989 ACGCAAGGTCACGGTCCGCATCCTCGGGCTTGCCGCCTCCGCCGCCTCGGTGATCGCCAT 25930 Query 25937 GGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCTGATGATCCACAACGCCTGGAC 25996 ||| | ||| ||||| |||||| ||| ||||| ||||||||| ||||||| |||||| Sbjct 25929 GGCCGGCGACGAGGTCCAGATCGGCCGTGCCGGATTCCTGATGCTCCACAATGCCTGGGT 25870 Query 25997 GATCGCCGCGGGTGACCGCAACGA 26020 | ||||| || ||||| |||| Sbjct 25869 GGTCGCCATCGGCAACCGCCACGA 25846 >seq178390 Length=32315 Score = 100 bits (110), Expect = 8e-17 Identities = 132/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 25813 TCAACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTACAACCTGCTGC-GCGAG 25871 |||||||||| |||||| |||||||| | | |||||||| ||||| |||| ||| Sbjct 4680 TCAACAGCCCCGGCGGATCGGTCTTCGACGCGGTGGCGATCCACAACGCGCTGAAGCGC- 4738 Query 25872 CACAAGGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTCCGCAGCGTCGTTCATT 25931 ||| |||||| ||||||||| | | |||| | || || ||||| || || | | | Sbjct 4739 CACGAGGGCACGGTCACCGTCTGGATCGACGGCATCGCCGCCTCCGCCGCATCCTACGTC 4798 Query 25932 GCCATGGCGGCCGATGAGGTGAAGATCGCCCGCGC-CGGCTTCCTGATGATCCACAAC 25988 |||||||||| ||| ||| | || ||||| | || |||||||||||||||| || Sbjct 4799 GCCATGGCGGGCGACGAGATCGTCAT-GCCCGAGAACGCCTTCCTGATGATCCACGAC 4855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133508751290772