Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq207413 104 3e-17 seq203897 104 3e-17 seq203896 104 3e-17 seq199157 104 3e-17 >seq207413 Length=2163 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 935 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 936 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 995 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 996 CTTGTACATCTCCCAGAT 1013 >seq203897 Length=2989 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 2075 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2134 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 2135 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2193 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 2194 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2253 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 2254 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2313 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 2314 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2373 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 2374 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2433 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 2434 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2493 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 2494 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 2553 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 2554 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 2613 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 2614 CTTGTACATCTCCCAGAT 2631 >seq203896 Length=2920 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 2006 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 2065 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 2066 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 2124 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 2125 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 2184 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 2185 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 2244 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 2245 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 2304 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 2305 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2364 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 2365 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2424 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 2425 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 2484 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 2485 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 2544 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 2545 CTTGTACATCTCCCAGAT 2562 >seq199157 Length=2194 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 1738 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1679 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 1678 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1620 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 1619 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1560 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 1559 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 1500 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 1499 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 1440 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 1439 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 1380 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 1379 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 1320 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 1319 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 1260 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 1259 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 1200 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 1199 CTTGTACATCTCCCAGAT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692719541980480