Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq203998 89.7 2e-13 seq199612 89.7 2e-13 seq199611 89.7 2e-13 seq199610 89.7 2e-13 >seq203998 Length=8852 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 7849 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 7790 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 7789 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 7730 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 7729 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 7671 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 7670 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 7611 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 7610 GTCCTCGTGATTCTCC 7595 >seq199612 Length=8864 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 1004 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 1063 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 1064 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 1123 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 1124 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 1182 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 1183 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 1242 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 1243 GTCCTCGTGATTCTCC 1258 >seq199611 Length=4817 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 2232 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 2173 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 2172 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 2113 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 2112 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 2054 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 2053 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 1994 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 1993 GTCCTCGTGATTCTCC 1978 >seq199610 Length=4818 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 2232 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 2173 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 2172 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 2113 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 2112 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 2054 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 2053 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 1994 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 1993 GTCCTCGTGATTCTCC 1978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186790337665152