Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq196771 199 2e-46 >seq196771 Length=22834 Score = 199 bits (220), Expect = 2e-46 Identities = 471/700 (67%), Gaps = 30/700 (4%) Strand=Plus/Plus Query 897 AGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTC 956 ||||||| ||||||||||| ||||| | ||| | ||||| | | ||||||| | Sbjct 19685 AGGGCTTTCCGCTGGTCACGACGAAAAAGCTGCACCTGAAATCCATCGTCCACGAACTGC 19744 Query 957 TGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCT 1016 |||||||||| |||||||||||| | || | | |||||||||| ||||| Sbjct 19745 TGTGGTTCCTGTCGGGCGACACGAACATCCGCTATCTGCAGCAGAACGGCGTCAGCATCT 19804 Query 1017 GGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGC 1076 ||||||| ||||| ||||| ||| ||||||| |||||||| ||| |||||||| | Sbjct 19805 GGGACGAATGGGCGGACGCGAACGGCGACCTCGGCCCTGTCTATGGCCATCAGTGGCGCC 19864 Query 1077 ACTGGC-----AT-GTCGAGGACGGAGG-ATCGTCGTG--------GATTGACCAGATCT 1121 | | | || ||||| || || ||| ||| | | || |||||| Sbjct 19865 ATTTCCCGACGATCCGCGAGGCCGATGGCCGCGTGGTGGTGGGCGAGGTGGATCAGATCG 19924 Query 1122 CGGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCAT 1181 | | ||||| | | ||| || || || || |||||| | || || || | Sbjct 19925 CCGAACTGGTGGACCGCATCCGCAAGACGCCCGATTCACGCCGGCTGATCGTCTCGGCCT 19984 Query 1182 GGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGT 1241 ||||| ||| || | | |||||| || | || ||||| | ||| ||| || Sbjct 19985 GGAACCCCGGAGAGGTGGACCGCATGGCCCTGCCGCCCTGCCATACGCTGTGGCAGGTGC 20044 Query 1242 ACGTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCG 1301 || ||||||||||| ||||||||| | ||||||||| || ||||||||||| | Sbjct 20045 GGGTGCAGGACGGCCGGCTGTCGCTGCAGCTTTACCAGCGCTCGGCCGACATGTTCCTGG 20104 Query 1302 GTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCG 1361 | ||||||||||| |||||||| || ||||| || |||| ||| | || || | || Sbjct 20105 GGGTGCCGTTCAACATCGCCTCCTATGCGCTGCTGACGCATATGCTGGCCCA-TGTGACG 20163 Query 1362 GCCTGCG-GGTGGGTGAGCTGATCTGGACCGGCGGCGACTGC-CACATCTACAACAACCA 1419 | | || || ||| || | ||| ||| ||||| ||| || |||||| ||||| Sbjct 20164 GGATACGAGGCGGGCGACTTCATCCACACCATGGGCGA-TGCGCATATCTACCTGAACCA 20222 Query 1420 CGTCGACCAGGCGCTGATGCAGCTCCGCCGACGACCGCG-GCCCTACCC-----GAGGCT 1473 | | ||||||| || || ||| || || | ||||| |||| ||| | || | Sbjct 20223 CCTGGACCAGGTGCAGACGCAACTGGCGCGCCAGCCGCGCCCCCTGCCCCGGCTGCGGAT 20282 Query 1474 CGTGCTACACCACG-CGCCGTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGA 1532 || | | | | | || | ||||||||||| | ||||| |||| | |||| || || Sbjct 20283 CGCG---CGCAAGGTCGAC-TCGATCTTCGATTTCCGGTTCGAGGATTTCCAGTTCCTGG 20338 Query 1533 ACTACGACCCGCACCCGTCGATCAAGGCGCCGGTGGCCGT 1572 |||| ||||| | ||| | |||||||||||||| || || Sbjct 20339 ACTATGACCCCCTGCCGGCCATCAAGGCGCCGGTCGCTGT 20378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295321022238282