Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq31122 176 1e-39 >seq31122 Length=1901 Score = 176 bits (194), Expect = 1e-39 Identities = 238/327 (73%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATC 40142 |||||||| |||||| | |||||||| ||||| ||||| ||| ||| |||| Sbjct 120 CCGAAGGTGATGATCTGGCCCACCTTGTCGCGGCCGTATTTCTCCTGGACATACTGGATC 179 Query 40143 ACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40200 || || | || || || || |||||||||||| | ||| ||||| ||||| |||| Sbjct 180 ACCTCCTCGCGGCGATCCATGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACCCGCT 237 Query 40201 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGC 40260 | ||||||||||| || ||||| | || | || | | |||||| ||||| |||||| Sbjct 238 CCGGGTTCAGGAAGCGTTCGAACAGCAGGCTGTAGCGCAAGGGGTCGAGGTCGGTGATGG 297 Query 40261 CGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACG 40319 || ||| ||||| ||||||||||| || ||||||| || || ||||||||| | | Sbjct 298 TCAGCGCA-TAGGCCACCAGCGAACCCGCGCCCGAGCCCCGCCCCGGTCCGACCGGGATG 356 Query 40320 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCC 40379 |||| ||||||||||| |||||| ||||| |||| |||||| || || || ||| Sbjct 357 CCGTGGTCCTTGGCCCATTTGATGAAATCGGCCACGATCAGGAAATATCCGGGAAAGCCC 416 Query 40380 AGCTGGATGATCATGTCGATCTCGTAC 40406 | ||| ||| ||| | | |||| || Sbjct 417 ATCTGCTCGATGATGCCCAGCTCGAAC 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159713908866096