Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq198488 95.1 3e-15 seq183536 95.1 3e-15 seq197527 86.0 2e-12 seq178390 84.2 6e-12 >seq198488 Length=23545 Score = 95.1 bits (104), Expect = 3e-15 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 4591 TGCACATCCACTCCCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTGCTGC 4650 || ||||| || ||||||||||||||| ||||||||| || ||||| ||| |||||| Sbjct 3727 TGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCTGC 3786 Query 4651 GCAACCACCCGGCCAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGG 4710 || ||| || | ||| ||| ||||| || | || |||||| ||||||| Sbjct 3787 GCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTCGG 3846 Query 4711 TCATCGCCATGGCCGGCGACACCATCTACAT-GCCCG 4746 |||| |||||||| ||||||| ||| | || ||||| Sbjct 3847 TCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCG 3883 >seq183536 Length=15448 Score = 95.1 bits (104), Expect = 3e-15 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 4591 TGCACATCCACTCCCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTGCTGC 4650 || ||||| || ||||||||||||||| ||||||||| || ||||| ||| |||||| Sbjct 11722 TGAACATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCTGC 11663 Query 4651 GCAACCACCCGGCCAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGG 4710 || ||| || | ||| ||| ||||| || | || |||||| ||||||| Sbjct 11662 GCGGGCACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTCGG 11603 Query 4711 TCATCGCCATGGCCGGCGACACCATCTACAT-GCCCG 4746 |||| |||||||| ||||||| ||| | || ||||| Sbjct 11602 TCATTGCCATGGCGGGCGACAGGATCGAGATCGCCCG 11566 >seq197527 Length=40067 Score = 86.0 bits (94), Expect = 2e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 4604 CCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTGCTGCGCAACCACCCGGC 4663 ||| ||||||||| |||||||||| ||||||||| |||||||||||| | |||| Sbjct 26046 CCCCGGCGGCGACTTCTTCGAGGGCGTGGCGATCTACAACCTGCTGCGCGAGGACCCACG 25987 Query 4664 CAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGGTCATCGCCATGGC 4723 || ||| || |||| || | || ||||| |||||||| ||||||||||| Sbjct 25986 CAAGGTCACGGTCCGCATCCTCGGGCTTGCCGCCTCCGCCGCCTCGGTGATCGCCATGGC 25927 Query 4724 CGGCGAC 4730 ||||||| Sbjct 25926 CGGCGAC 25920 >seq178390 Length=32315 Score = 84.2 bits (92), Expect = 6e-12 Identities = 178/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 4604 CCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTGCTGCGCAACCACCCGGC 4663 ||| ||||| |||||||| | | ||||||| | ||| |||| |||| || Sbjct 4687 CCCCGGCGGATCGGTCTTCGACGCGGTGGCGATCCACAACGCGCTGAAGCGCCACGAGGG 4746 Query 4664 CAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGGTCATCGCCATGGC 4723 || ||| ||| | ||||| ||| | || ||||| || || | |||||||||| Sbjct 4747 CACGGTCACCGTCTGGATCGACGGCATCGCCGCCTCCGCCGCATCCTACGTCGCCATGGC 4806 Query 4724 CGGCGACACCATCTACATGCCCGAGAACGCCATGATGATGGTGCATAAGCCCTGGGGCAT 4783 |||||| ||| |||||||||||||||| | ||||| | || | || ||| | Sbjct 4807 GGGCGACGAGATCGTCATGCCCGAGAACGCCTTCCTGATGATCCACGACCCGGCCGGCCT 4866 Query 4784 CCAGGGCGGCGATGCGGACGACATGCGCCGCTAT-GCCGAACTGCTCGACAAGGTCGAGG 4842 | | ||| || || |||||||| ||| || ||||| |||||||||||| ||| Sbjct 4867 CGTGATGGGCACGGCCGAGGACATGCG-CGCCATGGCCGAGGCGCTCGACAAGGTGAAGG 4925 Query 4843 ACACCCTGGTCATGGCCTATGCC 4865 || ||| ||| | ||||||| Sbjct 4926 GCAGCCTCGTCTCCGGCTATGCC 4948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137995957666476