Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq194362 91.5 1e-13 seq186304 91.5 1e-13 seq180639 91.5 1e-13 seq180638 91.5 1e-13 >seq194362 Length=24653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 99554 TAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613 ||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 20959 TAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTAA 20900 >seq186304 Length=18897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 99554 TAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613 ||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 15203 TAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTAA 15144 >seq180639 Length=8005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 99554 TAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613 ||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 2277 TAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTAA 2218 >seq180638 Length=39462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 99554 TAACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTAA 99613 ||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 3695 TAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTAA 3754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329993901358012