Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031226.1 Length=53717 Score E Sequences producing significant alignments: (Bits) Value seq178390 93.3 1e-14 >seq178390 Length=32315 Score = 93.3 bits (102), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 3460 TGCGCATCAACTCGCCCGGCGGCGACGTGTACGACGCGCTGGCCATCACCAACGCGCTG- 3518 |||| ||||| |||||||| || | ||||||| |||| ||| |||||||||| Sbjct 4674 TGCGGCTCAACAGCCCCGGCGGATCGGTCTTCGACGCGGTGGCGATCCACAACGCGCTGA 4733 Query 3519 --CGCAATCACGACGCGACGGTGACGGTGCAGGTCGACAGCCTCGCCGCCAGCGCAGCCA 3576 ||| ||||| | ||||| || || | ||||| || |||||||| ||| || Sbjct 4734 AGCGC---CACGAGGGCACGGTCACCGTCTGGATCGACGGCATCGCCGCCTCCGCCGCAT 4790 Query 3577 GCTTCATCGCGATGGCCGGCGACGAGGTCGTGATGTGCCGCAACTCCGAGCTGATGATCC 3636 || | |||| ||||| ||||||||| |||| ||| | ||| || |||||||||| Sbjct 4791 CCTACGTCGCCATGGCGGGCGACGAGATCGTCATGCCCGAGAACGCCTTCCTGATGATCC 4850 Query 3637 ACGACGCCCGCGGCTTCTGCATCGGCAGCGCCACCGACATG 3677 ||||| | |||| || || |||| ||| |||||| Sbjct 4851 ACGACCCGGCCGGCCTCGTGATGGGCACGGCCGAGGACATG 4891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171314901167436