Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031251.1 Length=47880 Score E Sequences producing significant alignments: (Bits) Value seq178390 100 9e-17 seq198488 96.9 1e-15 seq183536 96.9 1e-15 >seq178390 Length=32315 Score = 100 bits (110), Expect = 9e-17 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 3465 CGGATCAACAGCCCGGGCGGCAACGTGTTCGACGGGATCGCGATCCTCAACGCGCT-ACG 3523 ||| |||||||||| ||||| || ||||||| | | ||||||| ||||||||| | | Sbjct 4676 CGGCTCAACAGCCCCGGCGGATCGGTCTTCGACGCGGTGGCGATCCACAACGCGCTGAAG 4735 Query 3524 CGGTCACAAGGCCCACGTCACCACCATCGTCGACGGCCTCGCAGCGTCAGCAGCGAGCTT 3583 || ||| ||| | |||||| | |||||||| |||| || || || || || Sbjct 4736 CGC-CACGAGGGCACGGTCACCGTCTGGATCGACGGCATCGCCGCCTCCGCCGCATCCTA 4794 Query 3584 CATCGCGATGGCCGGCGACGAGATCGTGATGAATCGCAACGCGGAGATGATGATTCACGA 3643 | |||| ||||| |||||||||||||| ||| ||||| ||||||| ||||| Sbjct 4795 CGTCGCCATGGCGGGCGACGAGATCGTCATGCCCGAGAACGCCTTCCTGATGATCCACGA 4854 Query 3644 CGCCTCCGGTGT-GTGCATCGGCAACGCCAAGGACATGGCCGAGATGCACGACATGCTCG 3702 | | |||| | ||| || |||| ||| |||||||| || ||| ||| ||||| Sbjct 4855 CCCGGCCGGCCTCGTG-ATGGGCACGGCCGAGGACATGCGCGCCATGGCCGAGGCGCTCG 4913 Query 3703 A 3703 | Sbjct 4914 A 4914 >seq198488 Length=23545 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 3468 ATCAACAGCCCGGGCGGCAACGTGTTCGACGGGATCGCGATCCTCAACGCGCTACGCGGT 3527 |||||||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| Sbjct 3732 ATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCTGCGCGGG 3791 Query 3528 CACAAGGCCCACGTCACCACCATCGTCGACGGCCTCGCAGCGTCAGCAGCGAGCTTCATC 3587 ||||||| | | ||||| | ||| ||| ||||| || || || || |||| Sbjct 3792 CACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTCGGTCATT 3851 Query 3588 GCGATGGCCGGCGACGAGATCGTGAT 3613 || ||||| |||||| ||||| ||| Sbjct 3852 GCCATGGCGGGCGACAGGATCGAGAT 3877 >seq183536 Length=15448 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 3468 ATCAACAGCCCGGGCGGCAACGTGTTCGACGGGATCGCGATCCTCAACGCGCTACGCGGT 3527 |||||||||||||||||| |||||||||| ||| |||| ||| |||| ||| ||||| Sbjct 11717 ATCAACAGCCCGGGCGGCGACGTGTTCGAGGGGCTCGCCATCTACAACATGCTGCGCGGG 11658 Query 3528 CACAAGGCCCACGTCACCACCATCGTCGACGGCCTCGCAGCGTCAGCAGCGAGCTTCATC 3587 ||||||| | | ||||| | ||| ||| ||||| || || || || |||| Sbjct 11657 CACAAGGGCGATGTCACGGTGCGCATCGTCGGGCTCGCGGCCTCGGCCGCCTCGGTCATT 11598 Query 3588 GCGATGGCCGGCGACGAGATCGTGAT 3613 || ||||| |||||| ||||| ||| Sbjct 11597 GCCATGGCGGGCGACAGGATCGAGAT 11572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152686292621928