Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031262.1 Length=54751 Score E Sequences producing significant alignments: (Bits) Value seq208634 232 2e-56 >seq208634 Length=57299 Score = 232 bits (256), Expect = 2e-56 Identities = 361/515 (70%), Gaps = 12/515 (2%) Strand=Plus/Plus Query 41144 ACAACGACTGCGTGCCCGAAACCAAGTCCATGGGCGACAGCTCGGTAGATCTGATTGTCA 41203 |||||||||||||| |||| ||| ||||||| ||| |||||| | ||||| |||| Sbjct 42655 ACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCA 42714 Query 41204 CCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACA 41263 || || |||||| || ||| ||||| |||| |||| ||| |||||||||||||| Sbjct 42715 CCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACA 42774 Query 41264 CCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACGCCGCAGCTGCTGCGCA 41323 |||||||| ||| |||||||||| |||||||| || || || | ||||||||| Sbjct 42775 CCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCG 42834 Query 41324 TCCTTGCGCCCGGGCGGATCTACGCCTGCCATGTCAAGGACCGCATCTTGTTCGGAAACG 41383 | || | ||| || |||||| || ||| ||||||||||| ||| | || | Sbjct 42835 TTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA 42894 Query 41384 TCACCGGCGCAGGCGTTCCCACCGTCTCCCCGTTCCACGCCGA-GGCGATC-----TTCC 41437 ||| ||| || ||| ||| |||| || | ||| || ||| | |||| Sbjct 42895 TCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTTCC 42954 Query 41438 ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGTGC 41497 | || || ||||| | ||| |||||||||| ||| | ||| || ||||||| Sbjct 42955 AGCGC------CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTGC 43008 Query 41498 GGGAAAACAACCAGACGTACCGGCTGGGCTGGTCGGAGCAGTGCAAGGACGCTACGAAGA 41557 | || ||||||||||| || || ||||||||| | ||||| |||||||||| || | Sbjct 43009 GCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGCA 43068 Query 41558 TGGGCGTCGGCTCGCCGGAATACATTCTGTTGTTCCACAGGCCACAGTCAGACCGGTCCA 41617 ||||| ||| |||||||||| | ||| | |||| | | || | | | || || || Sbjct 43069 TGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCCGCCGCCCGCCGACCGATCGCAGCA 43128 Query 41618 AGGGCTACGCCGACACCCCGGTCACCAAATCCAAG 41652 | ||||| |||||| ||||| |||| ||||| Sbjct 43129 ACGGCTATGCCGACCGGCCGGTGGCCAAGGCCAAG 43163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174614880820692