Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F000826345.1_202015-01- 08] 224,482 sequences; 120,415,301 total letters Query= NC_031266.1 Length=44872 Score E Sequences producing significant alignments: (Bits) Value seq208634 197 4e-46 >seq208634 Length=57299 Score = 197 bits (218), Expect = 4e-46 Identities = 318/456 (70%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 39289 ACAACGACTGCGTTCACGAAACCGAGAGAATGGCAGACGATTCGGTGGATCTGATTGTCA 39348 ||||||||||||| ||| ||| ||||| || | |||||| | ||||| |||| Sbjct 42655 ACAACGACTGCGTGGCCGAGACCCGCTCCATGGCCGATGCCTCGGTGCAGCTGATCGTCA 42714 Query 39349 CCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGATTTCGGCCACA 39408 || || |||||| || ||| ||||| |||| |||| ||| ||| |||||||||| Sbjct 42715 CCTCGATCCCGTTCAGCACCCAGTACGAATACAGCCCGAACTATGCCGACTTCGGCCACA 42774 Query 39409 CCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCA 39468 |||||||| ||| |||||||||| |||||||| || || || | ||||||||| Sbjct 42775 CCGACGACGACGGGCATTTCTGGCAGCAGATGGGCTTTCTGGTCCCCGAACTGCTGCGCG 42834 Query 39469 TCCTCGCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGCAACG 39528 | || | ||||||||| ||| || ||||||||||||||| ||| | ||| | Sbjct 42835 TTCTGGAGCCGGGCCGGATCGCGGCGATCCACGTCAAGGACCGGATCATCCCGGGCGGCA 42894 Query 39529 TCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTTCACGCCGA-GGCGATC-----TTCC 39582 ||| ||| ||| | | ||| | || || | ||| || ||| | |||| Sbjct 42895 TCAACGGGTTCGGGTTTCAGACCCTCTCGACGCTGCACATGGATTGCGTGCGCGAGTTCC 42954 Query 39583 ACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACCGATGTGGTGC 39642 | || || ||||| | ||| |||||||||| ||| || || || ||||||| Sbjct 42955 AGCGC------CATGGCTTTGCCTATCTCGGCATGAAGACCATCACCACGGACGTGGTGC 43008 Query 39643 GGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGA 39702 | || ||||||||||| || || ||||||||| ||||||| ||||| |||| | | | Sbjct 43009 GCGAGAACAACCAGACCTATCGCCTGGGCTGGACCGAGCAATGCAAGGACGGCTCGCGCA 43068 Query 39703 TGGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCC 39738 ||||| ||| ||||||||| | ||| | |||| Sbjct 43069 TGGGCTGTGGCGTGCCGGAATACCTGCTGATCTTCC 43104 Score = 82.4 bits (90), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 40198 AAATGCACGTGTGCCCCCTGCAGTTCGACATCGTTGATCGGCTGATCACTCGTTTCTCGA 40257 |||||||| ||||||| ||||| | ||||||||| || || ||| | | | | Sbjct 43513 AAATGCACCTGTGCCCGCTGCAATACGACATCGTGGACCGCGCCATCGTCCAGTACACCG 43572 Query 40258 ATCCTGGCGAGTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCTC 40317 | || ||||| | ||| | ||||| |||||||||||| |||||||| || || || Sbjct 43573 AGCCGGGCGAATGGGTCTATGACCCCTTCGGCGGGCTGATGACCGTGCCCTTCCGCGCGG 43632 Query 40318 TGAAACTTGGTCGCCGCGGCCGTGGTGTCGAGCTGAATCCCGGCTACTACTTCGA-TGCT 40376 | || || | ||| ||| || ||||| ||||| ||||||| |||| ||| Sbjct 43633 TCAAGCTGCGGCGCATAGGCATCGGGGTCGAACTGAACAAGGGCTACTGGCTCGACGGCT 43692 Query 40377 GTCAAGTATTTGCAAGCCGAGGAGCGCCGGCGCGACATGCCAAGCCTGTTCGAC 40430 | ||| || | | |||| ||||| || | || ||| |||||||||||| Sbjct 43693 G-CAAATACGTCGAGGCCGCCCAGCGCGGGGTGGGCACGCCTAGCCTGTTCGAC 43745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143086351812456