Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4651 134 1e-26 >seq4651 Length=3183 Score = 134 bits (148), Expect = 1e-26 Identities = 371/565 (66%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 1600 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 1541 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 1540 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 1481 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 1480 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 1421 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 1420 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 1364 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || |||||||| || Sbjct 1363 ATGGCGCGGAAGAGGCGGTCCTTCTCGACGGAGTCCTTGACGTAGGTGTCGATGAGGAGC 1304 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 1303 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 1244 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 1243 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 1184 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 1183 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 1126 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 1125 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 1066 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 1065 CGGCCTTCTTGTACATCTCCCAGAT 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517428518246640