Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4792 156 5e-33 seq3858 154 2e-32 seq7266 150 2e-31 seq1785 150 2e-31 seq6454 143 3e-29 seq4764 141 1e-28 seq15283 140 4e-28 seq140 136 5e-27 seq1932 132 6e-26 seq6713 125 8e-24 seq4204 125 8e-24 seq91 104 3e-17 >seq4792 Length=3108 Score = 156 bits (172), Expect = 5e-33 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||||||| || |||| || ||||||||||| ||||| Sbjct 1702 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAA 1643 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || || | | Sbjct 1642 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1583 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 1582 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 1523 Query 43172 AAAGATTTGCATTTTT 43187 ||||| |||||| || Sbjct 1522 GAAGATCTGCATTGTT 1507 >seq3858 Length=3670 Score = 154 bits (170), Expect = 2e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || |||| || |||||||| || ||||| Sbjct 673 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 614 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || |||| | Sbjct 613 GATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 554 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||||||| || || |||| |||||||| ||||| || || ||||| || Sbjct 553 CTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 494 Query 43172 AAAGATTTGCATTTT 43186 ||||||||||| || Sbjct 493 GAAGATTTGCATGTT 479 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || |||| || ||||||||||| ||||| Sbjct 901 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAA 842 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || |||||||||| ||| ||||| || | | Sbjct 841 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 782 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||||| || || || |||| |||||||| ||||| || |||||||| || Sbjct 781 CTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGAC 722 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 721 GAAGATCTGCAT 710 >seq7266 Length=2119 Score = 150 bits (166), Expect = 2e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || |||| || ||||||||||| ||||| Sbjct 1563 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1504 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| |||| || | || |||||||||| ||| ||||| || | | Sbjct 1503 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 1444 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || |||||||| || || |||| |||||||| ||||| || || ||||| || Sbjct 1443 CTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1384 Query 43172 AAAGATTTGCATTTTT 43187 |||||||||||| || Sbjct 1383 GAAGATTTGCATTGTT 1368 >seq1785 Length=5934 Score = 150 bits (166), Expect = 2e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||||||||| || Sbjct 4385 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 4444 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || ||||||||| ||| ||||| || | | Sbjct 4445 GATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTT 4504 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 4505 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 4564 Query 43172 AAAGATTTGCATTTTT 43187 |||||||||||| || Sbjct 4565 GAAGATTTGCATTGTT 4580 >seq6454 Length=2394 Score = 143 bits (158), Expect = 3e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 104 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 163 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| |||||||| || | || | || |||||||||| ||| || || |||| || Sbjct 164 ATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTC 223 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||||||| || || |||| |||||||| ||||| || || ||||| || Sbjct 224 TCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACG 283 Query 43173 AAGATTTGCATTTT 43186 ||||||||||| || Sbjct 284 AAGATTTGCATGTT 297 >seq4764 Length=3127 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || |||| || |||||||| || ||||| Sbjct 103 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 162 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| |||||||| || | || | || |||||||||| ||| || || |||| | Sbjct 163 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 222 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||||||| || || |||| || ||||| ||||| || || ||||| || Sbjct 223 CTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCAC 282 Query 43172 AAAGATTTGCATTTTT 43187 ||||| |||||| || Sbjct 283 GAAGATCTGCATTGTT 298 >seq15283 Length=765 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || |||| || |||||||| || ||||| Sbjct 192 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 133 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || || | | Sbjct 132 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 73 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 72 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 13 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 12 GAAGATCTGCAT 1 >seq140 Length=17166 Score = 136 bits (150), Expect = 5e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||||||||| |||| || |||||||| || ||||| Sbjct 1245 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1304 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | || |||||||||| ||| || || || | | Sbjct 1305 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1364 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| || || |||| |||||||| ||||| || || ||||| Sbjct 1365 CTCGATGGTGTCCGAGCTC---TCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTT 1421 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 1422 GACGAAGATCTGCAT 1436 >seq1932 Length=5666 Score = 132 bits (146), Expect = 6e-26 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| | || |||| || ||||||||||| ||||| Sbjct 5589 CTCCTTCTGGATGTTGTAGTCGGCCAGGGCACGGCCGTCCTCGAGCTGCTTACCCGCGAA 5530 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || ||||||||| || ||||| || | | Sbjct 5529 GATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCTTCACGTT 5470 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 5469 CTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 5410 Query 43172 AAAGATTTGCATTTTT 43187 ||||| |||||| || Sbjct 5409 GAAGATCTGCATTGTT 5394 >seq6713 Length=2293 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || ||||| || || |||| || |||||||| || ||||| Sbjct 202 CTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 143 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || || | | Sbjct 142 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 83 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || |||||||| || || |||| || || || || || || || ||||| || Sbjct 82 CTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCGGTCAGGGTCTTCAC 23 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 22 GAAGATCTGCAT 11 Score = 118 bits (130), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||||||| || || | || || |||||||| || ||||| Sbjct 430 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 371 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || || || | | Sbjct 370 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 311 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| || || |||| ||||| || ||||| || || ||||| Sbjct 310 CTCGATGGTGTCCGAGCTC---TCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTT 254 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 253 GACGAAGATCTGCAT 239 >seq4204 Length=3449 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 202 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 143 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || || | | Sbjct 142 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 83 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||||||| || || |||| || || || || ||||| || ||||| || Sbjct 82 CTCGATAGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTCAC 23 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 22 GAAGATCTGCAT 11 >seq91 Length=20340 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || |||| | || |||| || |||||||| |||||| | Sbjct 1510 TCCTTCTGGATGTTGTAGTCGGCCAATGACCTGCCGTCCTCGAGCTGCTTGCCAGCGCAG 1569 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||| | || ||||||| ||||||||| | || || || | ||| Sbjct 1570 ATGAGGCGCTGGAGCTCCTTGGGCACGCCCTCCTTGTCGTGCACCTTCTGCTTCACAGTC 1629 Query 43113 GCCACCGTGTCGCTCGAT-TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | |||||||||| || | ||||| |||| |||||| || |||| ||| | ||| || Sbjct 1630 TCTACCGTGTCGC-CGCTCTCCACCTCGAGCGTGATCGTCCGCCCCGATAGGGCCTTCAC 1688 Query 43172 AAAGATTTGCATTT 43185 ||||||||||||| Sbjct 1689 GAAGATTTGCATTT 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571688240563440