Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq378 123 5e-23 >seq378 Length=11515 Score = 123 bits (136), Expect = 5e-23 Identities = 313/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 4369 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4428 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 4429 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4488 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | ||||| |||||||| ||||| || | | |||||| ||| |||| ||| Sbjct 4489 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 4548 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| |||| || | || || || ||||| | || Sbjct 4549 CCCAACGAGGCCCCCGGCCTGTTCGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 4606 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 4607 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 4666 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 4667 CCA---TCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCT 4723 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||| | ||||| || || || | | Sbjct 4724 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATTCAGTCGTCGAACCTGTGCACGG 4783 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||||||||||||||| Sbjct 4784 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTCTGCAACCTGGC 4832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073517414376064