Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4651 141 1e-28 >seq4651 Length=3183 Score = 141 bits (156), Expect = 1e-28 Identities = 391/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || ||||| || | || || | |||||| || | ||| Sbjct 1597 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1538 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| ||||| |||||| Sbjct 1537 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1478 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33757 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 1477 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1418 Query 33758 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1417 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 1358 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||||| || || || || || || || || ||||| | || ||| Sbjct 1357 CGGAAGAGGCGGTCCTTCTCGACGGAGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 1298 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1297 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 1238 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | |||||| || | || || | || | ||| || ||| || || || || || Sbjct 1237 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 1178 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 34054 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 1177 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1119 Query 34055 ATCATTGATATCTTTAGAT-ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 1118 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 1060 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 1059 TCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629675119513440