Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4651 145 1e-29 >seq4651 Length=3183 Score = 145 bits (160), Expect = 1e-29 Identities = 394/592 (67%), Gaps = 12/592 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 1597 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1538 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 1537 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1479 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT- 50134 ||| || || || ||||| || | || || | ||| | | | | ||| || | Sbjct 1478 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1419 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1418 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1359 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 1358 GCGGAAGAGGCGGTCCTTCTCGACGGAGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1299 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1298 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 1239 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 1238 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 1179 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || ||||| || || || || || || | ||| | | |||| || | || Sbjct 1178 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 1120 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 1119 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 1061 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 1060 TTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718106309640720