Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1785 116 4e-21 seq7588 100 3e-16 seq7266 95.1 1e-14 seq1932 93.3 4e-14 seq6806 82.4 8e-11 >seq1785 Length=5934 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || || || || || |||||||| ||| Sbjct 4350 CCGCCACGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4409 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| || ||||||||| |||| ||||| ||||| |||||||| Sbjct 4410 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 4469 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || ||||| || | | || | |||||| ||| || || Sbjct 4470 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACC 4529 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || || ||||| |||||||| Sbjct 4530 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 4576 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || ||| Sbjct 4152 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 4211 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| || || || || || ||||| || || || || Sbjct 4212 GCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 4271 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | ||| | ||||||||||| | || Sbjct 4272 ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTC 4331 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 4332 TTGACGAAGATCTGCATA 4349 >seq7588 Length=2028 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 230 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 171 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||||||||| || |||||||| ||||| || || || || Sbjct 170 GCGAAGATGAGACGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 111 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| ||| || || || | ||| | |||||||||||||| || Sbjct 110 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTC 51 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 50 TTGACGAAGATCTGCATA 33 >seq7266 Length=2119 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || ||||| Sbjct 1568 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCG 1509 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||||||||| ||||| || ||||| || ||||| || Sbjct 1508 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTC 1449 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | | || || || | || | ||||||||||||| || Sbjct 1448 ACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 1389 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 1388 TTCACGAAGATTTGCAT 1372 >seq1932 Length=5666 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || || || || || |||||||| ||| || | || || ||| ||||| || |||| Sbjct 5594 GTGGACTCCTTCTGGATGTTGTAGTCGGCCA--GGGCACGGCCGTCCTCGAGCTGCTTAC 5537 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | || |||| ||||| ||||| |||||||| |||||||| ||||| ||| ||||| | Sbjct 5536 CCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCT 5477 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||| ||| || || || | || | ||||||||||| | | Sbjct 5476 TCACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGG 5417 Query 143166 TTTTTACGAATATTTGCAT 143184 | || ||||| || ||||| Sbjct 5416 TCTTCACGAAGATCTGCAT 5398 >seq6806 Length=2266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| ||| || |||| ||| ||||| || Sbjct 2217 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGC 2158 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || ||||| |||| ||||| |||||||| ||||| ||||| || ||||| || || Sbjct 2157 TTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTC 2098 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || || | | || | || || ||| || || || | || | ||||||||||| Sbjct 2097 TGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 2038 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || ||||| || ||||| Sbjct 2037 AGGGTCTTCACGAAGATCTGCAT 2015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506899700667360