Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2256 98.7 8e-16 seq4764 91.5 1e-13 seq6713 86.0 5e-12 >seq2256 Length=5188 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | | ||||| | ||||| || | Sbjct 4869 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCACCGTGCTTCTTAC- 4811 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 4810 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 4751 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 4750 GGACGTGGAAGCCGTG 4735 >seq4764 Length=3127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || |||| || | ||||||| ||||| || || Sbjct 98 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 157 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||||||| ||| | |||||| ||||| || ||||| || Sbjct 158 GCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTG 217 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | ||| |||| ||||||||| || || || | || Sbjct 218 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTC 277 Query 19025 TTGACAAAAATTTGCATT 19042 || || || || |||||| Sbjct 278 TTCACGAAGATCTGCATT 295 >seq6713 Length=2293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || ||||| || |||| || | ||||||| ||||| || || Sbjct 207 GTCGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 148 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| ||| ||| | |||||| ||||| || ||||| || Sbjct 147 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 88 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||||| | ||| |||| ||||| || ||||| || | || Sbjct 87 ACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCGGTCAGGGTC 28 Query 19025 TTGACAAAAATTTGCAT 19041 || || || || ||||| Sbjct 27 TTCACGAAGATCTGCAT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414481357936612