Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6806 118 2e-21 seq1932 102 2e-16 >seq6806 Length=2266 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | ||||| | ||||| || || || || ||| Sbjct 2211 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 2152 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||| ||||| ||| || Sbjct 2151 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 2093 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | || ||||| || || || ||||| || || || || Sbjct 2092 CACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 2033 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 2032 CTTCACGAAGATCTGCATT 2014 >seq1932 Length=5666 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || | | ||||| Sbjct 5610 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGCACGGCCGTC 5551 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || ||||| || ||||| || || Sbjct 5550 CTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 5491 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | ||| ||||| | || ||||| || || || || Sbjct 5490 CTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGT 5431 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || || || ||||||||| Sbjct 5430 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 5397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151131413019384