Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6806 114 1e-20 seq4792 114 1e-20 seq7588 105 6e-18 seq7266 105 6e-18 seq3858 105 6e-18 seq1932 105 6e-18 seq1785 105 6e-18 seq4764 104 2e-17 seq140 87.8 2e-12 >seq6806 Length=2266 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || |||| | || || ||||||| ||||| Sbjct 2217 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGC-CGTCCTCGAGCTG 2159 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| || | | ||||||||| || || Sbjct 2158 CTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 2099 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | ||||||||| | ||||| ||||| || ||||| || ||||| Sbjct 2098 CTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2039 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 ||| || ||||| || |||||||| || Sbjct 2038 GAGGGTCTTCACGAAGATCTGCATTGT 2012 >seq4792 Length=3108 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| ||||||| | || || ||||||| ||||| Sbjct 1713 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGC-CGTCCTCGAGCTG 1655 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 1654 CTTACCCGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1595 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | || || ||| | ||||| ||||| || ||||| || ||||| Sbjct 1594 CTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1535 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 ||| || ||||| || |||||||| || Sbjct 1534 GAGGGTCTTCACGAAGATCTGCATTGT 1508 >seq7588 Length=2028 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 236 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 177 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| ||| | | |||||||||| || ||| Sbjct 176 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTC 117 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||||| || || || || ||||| Sbjct 116 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTC 57 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 56 AGGGTCTTGACGAAGATCTGCAT 34 >seq7266 Length=2119 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 1574 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1515 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | || | |||||||||||| || | | ||||||||| || || Sbjct 1514 TTACCGGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTT 1455 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||||||| | ||||| ||||| || ||||| || ||||| Sbjct 1454 TGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 1395 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || || ||||| || Sbjct 1394 AGGGTCTTCACGAAGATTTGCATTGT 1369 >seq3858 Length=3670 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 912 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 853 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | ||||||||||||| || | | ||||||||| || || Sbjct 852 TTACCCGCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTT 793 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||||||| | ||||| ||||| || ||||| || ||||| Sbjct 792 TGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 733 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 732 AGCGTCTTGACGAAGATCTGCAT 710 >seq1932 Length=5666 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 5600 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGCACGGCCGTCCTCGAGCTGC 5541 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | ||||||||| || || | | |||||||||| ||| || Sbjct 5540 TTACCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTT 5481 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| ||| | ||||| ||| | || ||||| || |||||| Sbjct 5480 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTG 5421 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 5420 AGGGTCTTCACGAAGATCTGCATTGT 5395 >seq1785 Length=5934 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 4146 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGC 4205 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||||||| || | || ||||||||| || ||| Sbjct 4206 TTGCCAGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTTC 4265 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || |||| ||||| ||||| || ||||| || |||||| Sbjct 4266 TGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTG 4325 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 4326 AGGGTCTTGACGAAGATCTGCAT 4348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 4374 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 4433 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | | || | ||||||||| || || | | |||||||||| || || Sbjct 4434 TTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTT 4493 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || ||| | ||||| ||||| || ||||| || ||||| Sbjct 4494 TGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 4553 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || || || || || ||||| || Sbjct 4554 AGGGTCTTGACGAAGATTTGCATTGT 4579 >seq4764 Length=3127 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||| |||||||| ||| || | Sbjct 103 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 162 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||||||| || | | ||||||||| || |||||||||| Sbjct 163 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 222 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 223 CTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCAC 282 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 283 GAAGATCTGCATTGT 297 >seq140 Length=17166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 ||||||| |||| |||||| || | || | |||||||||||| || | || |||| Sbjct 1508 CGTCCTCGAGCTCCTTACCCGCGAAGATGAGACGCTGCTGATCGGTAGGAATACCCTCCT 1567 Query 48630 TGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTA 48689 ||||| | || ||||| | | | ||||||||| | || || ||||| || | Sbjct 1568 TGTCCTGGACCTTTTGCTTCACGCTCTCGATGGTATCGCTGGATTCGACCTCGAGGGTGA 1627 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCA---TCGTGTCTTG 48735 |||| || | ||||| ||| |||||||| ||||||| |||||| ||| Sbjct 1628 TGGTCTTGCAGGTGATAGTCTTCACAAAGATCTGCATTGTCGTGTGTTG 1676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421158284886098