Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4651 131 2e-25 >seq4651 Length=3183 Score = 131 bits (144), Expect = 2e-25 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 1597 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1538 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 1537 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1478 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || ||| || | | Sbjct 1477 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTG 1418 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1417 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 1358 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 1357 CGGAAGAGGCGGTCCTTCTCGACGGAGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 1298 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1297 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 1238 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 1237 ACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 1178 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || ||||| || || || || || | | ||||| | |||| || | ||| Sbjct 1177 GCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCCCA 1119 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 1118 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 1060 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 1059 TCTTGTACATCTCCCAGATG 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622806273769680