Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7266 96.9 3e-15 seq7588 91.5 1e-13 seq6713 86.0 6e-12 seq1932 84.2 2e-11 >seq7266 Length=2119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || || || | |||||| |||| | || || | Sbjct 1371 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 1430 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| ||||||||| | || || |||||||| ||||| || || || ||||||||||| Sbjct 1431 CGATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 1490 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||| || || ||||| || | | | | | |||||| || Sbjct 1491 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 1550 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || |||| || ||||| Sbjct 1551 CATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 1583 >seq7588 Length=2028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| || |||| | || || | | Sbjct 34 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAGC 93 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| ||||| || || |||||||| Sbjct 94 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGATCAG 153 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | | | |||||| ||| Sbjct 154 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 213 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || || || || || |||| || ||||| | ||| | || || || Sbjct 214 ATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTTCGTGGTGGCAA 263 >seq6713 Length=2293 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || |||||||| || Sbjct 299 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 358 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| |||| | | | | | ||||| ||| Sbjct 359 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTGGCTGACTACAAC 418 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || ||||| Sbjct 419 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 450 >seq1932 Length=5666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 26761 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||||||| |||| | || || || || | || || || | |||||| | || | | Sbjct 5392 CAAACAA--TGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCG 5449 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | || | ||||||||||||| | || || ||||||||| ||||| ||||| || |||| Sbjct 5450 AGTCCAGCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAAGGCATCCCTC 5509 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 |||| || || | ||||| | || || || || ||||| || | | | | || Sbjct 5510 CCGACCAGCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTGCCCTGGCCG 5569 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || || || || || |||| || || || Sbjct 5570 ACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 5609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478554114598560