Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7588 107 2e-18 seq7266 100 2e-16 seq1932 100 2e-16 seq6713 86.0 5e-12 >seq7588 Length=2028 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || ||||||| |||| |||||| ||| | Sbjct 34 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAGC 93 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| |||||||| || |||||||| Sbjct 94 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGATCAG 153 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | ||| || ||| Sbjct 154 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 213 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 214 ATCCAGAAGGAGTCCAC 230 >seq7266 Length=2119 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | || ||| |||| |||||| | | Sbjct 1371 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 1430 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| ||||||||| | || || |||||||| ||||| || ||||| ||||||||||| Sbjct 1431 CGATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 1490 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||| ||||| ||||| || | | | | | | ||| || || Sbjct 1491 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 1550 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 1551 CATCCAGAAGGAGTCCAC 1568 >seq1932 Length=5666 Score = 100 bits (110), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 23982 CCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 |||||||| |||| | || || || || | || || || | || ||| | || ||| Sbjct 5391 CCAAACAA--TGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTC 5448 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| ||| ||||||||||||| | || || ||||||||| ||||| |||||||| ||| Sbjct 5449 GAGTCCAGCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAAGGCATCCCT 5508 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| || ||| | || || | || || ||||| ||||| || Sbjct 5509 CCCGACCAGCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGA 5552 >seq6713 Length=2293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 239 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGAGCTCG 298 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| |||||||| || Sbjct 299 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 358 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | || || | || ||||||||| ||||| |||| Sbjct 359 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429841169285190